Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq26 113 8e-23 seq21 113 8e-23 seq23 93.3 8e-17 >seq26 Length=1556943 Score = 113 bits (124), Expect = 8e-23 Identities = 186/264 (70%), Gaps = 21/264 (8%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAG---------GCCTTTGCTCG----AATA 121 ||||||||| |||||||||||||||||||| || |||| || |||| Sbjct 92993 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAAACAGATATAGCATTTGTGCGTTTGAATA 92934 Query 122 CATTAGCATGGAATAATAGAATAGGACGTG-CGGTTCTATTTTGTTGGTTTCTAGGACC- 179 | |||||||||||| | ||| | || | | | | ||||||| ||| | | Sbjct 92933 CTACAGCATGGAATAACAAAATTGAACAAGTCAGAATTTTTTTGTTCTTTTTTCTTATTT 92874 Query 180 --GCC--GTAATGATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTG 234 || || | |||||||||| ||| | ||||| | ||||||| ||||||||||| Sbjct 92873 TGGCTTAGTTACGATTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAGGTG 92814 Query 235 AAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCAT 294 |||||||| ||||| || |||| ||| ||||||||||| || || | || || ||| Sbjct 92813 AAATTCTTAGATTTTCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCAT 92754 Query 295 TAATCAGTGAACGAAAGTTAGGGG 318 |||||| |||||||||||| ||| Sbjct 92753 TAATCA-AGAACGAAAGTTAAGGG 92731 >seq21 Length=1079809 Score = 113 bits (124), Expect = 8e-23 Identities = 186/264 (70%), Gaps = 21/264 (8%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAG---------GCCTTTGCTCG----AATA 121 ||||||||| |||||||||||||||||||| || |||| || |||| Sbjct 978854 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAAACAGATATAGCATTTGTGCGTTTGAATA 978913 Query 122 CATTAGCATGGAATAATAGAATAGGACGTG-CGGTTCTATTTTGTTGGTTTCTAGGACC- 179 | |||||||||||| | ||| | || | | | | ||||||| ||| | | Sbjct 978914 CTACAGCATGGAATAACAAAATTGAACAAGTCAGAATTTTTTTGTTCTTTTTTCTTATTT 978973 Query 180 --GCC--GTAATGATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTG 234 || || | |||||||||| ||| | ||||| | ||||||| ||||||||||| Sbjct 978974 TGGCTTAGTTACGATTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAGGTG 979033 Query 235 AAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCAT 294 |||||||| ||||| || |||| ||| ||||||||||| || || | || || ||| Sbjct 979034 AAATTCTTAGATTTTCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCAT 979093 Query 295 TAATCAGTGAACGAAAGTTAGGGG 318 |||||| |||||||||||| ||| Sbjct 979094 TAATCA-AGAACGAAAGTTAAGGG 979116 >seq23 Length=1360573 Score = 93.3 bits (102), Expect = 8e-17 Identities = 182/265 (69%), Gaps = 22/265 (8%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAG-----------GCCTTTGCTCG----AA 119 ||||||||| |||||||||||||||||||| || |||| || || Sbjct 109816 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAAACAGATATATAGCATTTGTGCGTTTGAA 109757 Query 120 TACATTAGCATGGAATAATAGAATAGGACGTG-CGGTTCTAT-TTTGTTGGTTTCTAGGA 177 ||| |||||||||||| | ||| | || | | |||| ||| || ||| || Sbjct 109756 TACTACAGCATGGAATAACAAAATTGAACAGGTCAAAACTATGTTTCTTTTTTTTTATTT 109697 Query 178 CCGCCGTAAT---GATTAATAGGGATAGTCGGGGGTG-TCAGTATTCAATTGTCAGAGGT 233 | | || | |||||||||| |||| |||| | ||||||| |||||||||| Sbjct 109696 TTGGCTTAGTTACGATTAATAGGAGTAGTTTGGGGACATTTGTATTCAGATGTCAGAGGT 109637 Query 234 GAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA 293 |||||||| ||||| || |||| ||| |||||||| || || | | || || || Sbjct 109636 GAAATTCTAAGATTTTCTGGAGACAAACAACTGCGAAGGCATTTGTCTAAAATACTTCCA 109577 Query 294 TTAATCAGTGAACGAAAGTTAGGGG 318 ||||||| |||||||||||| ||| Sbjct 109576 TTAATCA-AGAACGAAAGTTAAGGG 109553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915199743744