Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq23 96.9 1e-17 seq26 89.7 2e-15 seq21 89.7 2e-15 seq16 87.8 7e-15 >seq23 Length=1360573 Score = 96.9 bits (106), Expect = 1e-17 Identities = 121/161 (75%), Gaps = 5/161 (3%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGG--TAAATTTCTTCTAAAGCTAA 97 |||||| ||| |||| || || ||| | ||||| | | || ||||| ||||||||| Sbjct 100744 GAGTCGTGTTCTTTGAGATTGGAGCAC-AAATGCGTGTGATACATTTCACATAAAGCTAA 100686 Query 98 ATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTG 156 |||| | |||||||||||| ||||||| |||| ||||||||||| || ||| | Sbjct 100685 ATATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAG 100626 Query 157 GAAAGAG-AGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 ||| ||| | |||||||| || |||||| ||| | | |||| Sbjct 100625 GAATGAGCAATTAAAAAGTACCTGAAATCGTTAAGATGGAA 100585 Score = 80.6 bits (88), Expect = 1e-12 Identities = 100/137 (73%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||||||||||| || | |||||||| || ||||||| || || || ||| Sbjct 100004 TTGAGTAAGAGCATATTTGGTAGGACCCGAGAGGCTTTGAACTAAGCGTGGTGAGATTGA 99945 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||||| ||| | | | ||| ||||||||||| || | | Sbjct 99944 AGTCAGACGAAAGTCTGATGGAGGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 99885 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 99884 ATCACGTTTAGGGGCGA 99868 >seq26 Length=1556943 Score = 89.7 bits (98), Expect = 2e-15 Identities = 121/164 (74%), Gaps = 5/164 (3%) Strand=Plus/Minus Query 37 GACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGG--TAAATTTCTTCTAAAGC 94 || |||||| ||| |||| || || ||| | ||||| | | || ||||| |||||| Sbjct 90326 GAAGAGTCGTGTTCTTTGAGATTGGAGCAC-AAATGCGTGTGATACATTTCACATAAAGC 90268 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACT 153 ||||||| | |||||||||||| ||||||| |||| ||||||||||| || ||| Sbjct 90267 TAAATATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACT 90208 Query 154 TTGGAAAGAG-AGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||| ||| ||||| || || |||||| ||| | | |||| Sbjct 90207 CAGGAATGAGCCATTAAATAGTACCTGAAATCGTTAAGATGGAA 90164 Score = 80.6 bits (88), Expect = 1e-12 Identities = 100/137 (73%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||||||||||| || | |||||||| || ||||||| || ||| || ||| Sbjct 89658 TTGAGTAAGAGCATATTTGGTAGGACCCGAGAGGCTTTGAACTAAGCGTGACGAGATTGA 89599 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||| | ||| | | | ||| ||||||||||| || | | Sbjct 89598 AGTCAGACGAAAGTCTGATGGAAGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 89539 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 89538 GTCACGTTTAGGGGCGA 89522 >seq21 Length=1079809 Score = 89.7 bits (98), Expect = 2e-15 Identities = 121/164 (74%), Gaps = 5/164 (3%) Strand=Plus/Plus Query 37 GACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGG--TAAATTTCTTCTAAAGC 94 || |||||| ||| |||| || || ||| | ||||| | | || ||||| |||||| Sbjct 981513 GAAGAGTCGTGTTCTTTGAGATTGGAGCAC-AAATGCGTGTGATACATTTCACATAAAGC 981571 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACT 153 ||||||| | |||||||||||| ||||||| |||| ||||||||||| || ||| Sbjct 981572 TAAATATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACT 981631 Query 154 TTGGAAAGAG-AGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||| ||| ||||| || || |||||| ||| | | |||| Sbjct 981632 CAGGAATGAGCCATTAAATAGTACCTGAAATCGTTAAGATGGAA 981675 Score = 80.6 bits (88), Expect = 1e-12 Identities = 100/137 (73%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||||||||||| || | |||||||| || ||||||| || ||| || ||| Sbjct 982181 TTGAGTAAGAGCATATTTGGTAGGACCCGAGAGGCTTTGAACTAAGCGTGACGAGATTGA 982240 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||| | ||| | | | ||| ||||||||||| || | | Sbjct 982241 AGTCAGACGAAAGTCTGATGGAAGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 982300 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 982301 GTCACGTTTAGGGGCGA 982317 >seq16 Length=1982946 Score = 87.8 bits (96), Expect = 7e-15 Identities = 121/165 (73%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 37 GACGAGTCGAGTTGTTTGGGAATGCAGCTCTAA---ATGGGAGGTAAATTTCTTCTAAAG 93 || |||||| ||| |||| || || ||| | || ||| | | || ||||| ||||| Sbjct 107333 GAAGAGTCGTGTTCTTTGAGATTGGAGCACAAATGCATGTG-GATACATTTCACATAAAG 107275 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCAC 152 |||||||| | |||||||||||| ||||||| |||| ||||||||||| || || Sbjct 107274 CTAAATATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTAC 107215 Query 153 TTTGGAAAGAG-AGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 | |||| ||| ||||| || || |||||| ||| | | |||| Sbjct 107214 TCAGGAATGAGCCATTAAATAGTACCTGAAATCGTTAAGATGGAA 107170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079999399400