Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq26 291 1e-76 seq23 291 1e-76 seq21 291 1e-76 seq15 123 4e-26 seq16 113 8e-23 >seq26 Length=1556943 Score = 291 bits (322), Expect = 1e-76 Identities = 188/206 (91%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 87110 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 87169 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 87170 TTAGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 87229 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||| Sbjct 87230 CATCGAAGGATCAAAAAGCTACGTCGCTAGGAGCGCTTGGCAGCCACAAGCCAGTTATCC 87289 Query 211 CTGTGGTAACTTTTCTGGCACCTCTA 236 ||||||||||||||| | |||||||| Sbjct 87290 CTGTGGTAACTTTTCAGACACCTCTA 87315 >seq23 Length=1360573 Score = 291 bits (322), Expect = 1e-76 Identities = 188/206 (91%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 97362 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 97421 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 97422 TTAGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 97481 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||| Sbjct 97482 CATCGAAGGATCAAAAAGCTACGTCGCTAGGAGCGCTTGGCAGCCACAAGCCAGTTATCC 97541 Query 211 CTGTGGTAACTTTTCTGGCACCTCTA 236 ||||||||||||||| | |||||||| Sbjct 97542 CTGTGGTAACTTTTCAGACACCTCTA 97567 >seq21 Length=1079809 Score = 291 bits (322), Expect = 1e-76 Identities = 188/206 (91%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 984729 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 984670 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 984669 TTAGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 984610 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||| Sbjct 984609 CATCGAAGGATCAAAAAGCTACGTCGCTAGGAGCGCTTGGCAGCCACAAGCCAGTTATCC 984550 Query 211 CTGTGGTAACTTTTCTGGCACCTCTA 236 ||||||||||||||| | |||||||| Sbjct 984549 CTGTGGTAACTTTTCAGACACCTCTA 984524 >seq15 Length=914168 Score = 123 bits (136), Expect = 4e-26 Identities = 140/184 (76%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 51 ACCTGTCTCATGACGGTCT----AAACCCAG-CTCACGTTCCCTATTAGTGG-GTGAACA 104 ||||||||||||| ||||| || | || | | |||||||| |||| || ||||||| Sbjct 845429 ACCTGTCTCATGAAGGTCTCTAAAATTCTAGGCACTCGTTCCCTCTTAGCGGAGTGAACA 845370 Query 105 ATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAA 164 |||| || ||| || |||||| || ||||||||||||||| || || || |||| Sbjct 845369 ATCCGACACTTTGAGATTTCTGCGTCCCAATGATAGGAAGAGCCAACGTCTAATTATCAG 845310 Query 165 AAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC--CTGTGGTAACTT 222 ||||| |||| |||| | |||| || ||| |||||||||||||| ||| ||||| | Sbjct 845309 AAAGCCACGTTGCTAAAATCGCTCGGTAGCCGCAAGCCAGTTATCCTTTTGTAGTAACCT 845250 Query 223 TTCT 226 |||| Sbjct 845249 TTCT 845246 >seq16 Length=1982946 Score = 113 bits (124), Expect = 8e-23 Identities = 154/210 (73%), Gaps = 14/210 (7%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAA-CTAACCT-GTCTCATGACGGTCTAAA---CCCAGCTCACGTT 85 ||||||||||| ||||| ||| | |||||||||| | | ||| | ||||||||||| Sbjct 103495 TCATCAGTAGGTTAAAAACTAGGCAAGTCTCATGACTGCCCAAAAAACTCAGCTCACGTT 103554 Query 86 CCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGA 145 |||| |||| || |||||||||| || ||| || |||| | || |||||||||| Sbjct 103555 CCCTGTTAGCGGTTGAACAATCCGACACTTTGGGATTTCTTCATCCCAATGATAGGAAAT 103614 Query 146 GCCGA-----CATCGAAGGATCAAAAAGCAACGTCGCTATGA-ACGCTTGGCTGCCACAA 199 || || | || ||||||||||| ||||||||| | |||| ||| ||| ||| Sbjct 103615 GCTGATAATTTACAAAATGATCAAAAAGCTACGTCGCTAAAAGTCGCTCGGCGGCCGCAA 103674 Query 200 GCCAGTTATCCCTGTGGTAAC---TTTTCT 226 | |||||||||| | |||| |||||| Sbjct 103675 GAAAGTTATCCCTATCATAACCCTTTTTCT 103704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854399760768