Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq23 125 1e-26 seq21 123 5e-26 seq26 122 2e-25 >seq23 Length=1360573 Score = 125 bits (138), Expect = 1e-26 Identities = 204/299 (68%), Gaps = 41/299 (14%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 108933 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 108874 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC--- 186 |||| ||||||||| || ||| ||||||| |||||||||| | |||||||| Sbjct 108873 GATGTCCTTAGATGAACTAGGCTGCACGCGTGCTACACTGATATGTATAACGAGTTACTA 108814 Query 187 --ATCAC----------------------------CTTGGCC------GGAAGGTCTGGG 210 || || ||| || | || || | || Sbjct 108813 AAATTACGATATGGCTGCTTGCAGTTTATTTCGTACTTTTCCTCCACTGAAAAGTGTAGG 108754 Query 211 TAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACG 269 ||||||| | || | | ||||| |||||||||| |||||||||||| |||| |||| Sbjct 108753 TAATCTTTATCAATACATATCGTGATGGGGATAGATTATTGCAATTATTAATCTTGAACG 108694 Query 270 AGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||| | ||||||| | | ||| ||||||||||||||||||| Sbjct 108693 AGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTGCCCTTTGTA 108635 >seq21 Length=1079809 Score = 123 bits (136), Expect = 5e-26 Identities = 204/300 (68%), Gaps = 42/300 (14%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 979687 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 979746 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC--- 186 |||| ||||||||| || ||| ||||||| |||||||||| | |||||||| Sbjct 979747 GATGTCCTTAGATGAACTAGGCTGCACGCGTGCTACACTGATATGTATAACGAGTTACTA 979806 Query 187 --ATCAC-----------------------------CTTGGCC------GGAAGGTCTGG 209 || || ||| || | || || | | Sbjct 979807 AAATTACGATTTTAGCTGCTTGCAGTTTATTTCGTACTTTTCCTCCACTGAAAAGTGTAG 979866 Query 210 GTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAAC 268 |||||||| | || | | ||||| |||||||||| |||||||||||| |||| ||| Sbjct 979867 GTAATCTTTATCAATACATATCGTGATGGGGATAGATTATTGCAATTATTAATCTTGAAC 979926 Query 269 GAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| | ||||||| | | ||| ||||||||||||||||||| Sbjct 979927 GAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTGCCCTTTGTA 979986 >seq26 Length=1556943 Score = 122 bits (134), Expect = 2e-25 Identities = 204/301 (68%), Gaps = 43/301 (14%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 92160 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 92101 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC--- 186 |||| ||||||||| || ||| ||||||| |||||||||| | |||||||| Sbjct 92100 GATGTCCTTAGATGAACTAGGCTGCACGCGTGCTACACTGATATGTATAACGAGTTACTA 92041 Query 187 --ATCAC------------------------------CTTGGCC------GGAAGGTCTG 208 || || ||| || | || || | Sbjct 92040 AAATTACGATTTTAGCTGCTTGCAGTTTATTTTCGTACTTTTCCTCCACTGAAAAGTGTA 91981 Query 209 GGTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAA 267 ||||||||| | || | | ||||| |||||||||| |||||||||||| |||| || Sbjct 91980 GGTAATCTTTATCAATACATATCGTGATGGGGATAGATTATTGCAATTATTAATCTTGAA 91921 Query 268 CGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGT 327 ||||||||||||||||||| | ||||||| | | ||| |||||||||||||||||| Sbjct 91920 CGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTGCCCTTTGT 91861 Query 328 A 328 | Sbjct 91860 A 91860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947199734784