Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq26 482 8e-134 seq21 482 8e-134 seq23 455 1e-125 seq16 98.7 3e-18 >seq26 Length=1556943 Score = 482 bits (534), Expect = 8e-134 Identities = 455/580 (78%), Gaps = 49/580 (8%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 87427 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 87486 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCA------ACC 120 ||||||||||||| ||||||||| ||||||||||||||| | ||||| || | Sbjct 87487 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTCTCCATAGAATATG 87546 Query 121 CGG------ATCGGCC--CGCGAAGGACC----TTAACGCCAGAAA-ATGG-----TCGG 162 || | || || |||| | | | |||| | | || ||| | || Sbjct 87547 TGGGAGATAAGCGACCATCGCGGATGGCACTTGTTAATTCAAATAATATGAATTACTTGG 87606 Query 163 TGAAGACCA-GT---------TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGT 212 | ||||| || ||| |||| | ||||||||| ||| ||| ||||| Sbjct 87607 CG--GACCAAGTAAATATATATCCCTTTCAATAGATAAGTAAAACAACTTTAAAAGTAGT 87664 Query 213 GGTATTTCACTTGCGCCGAAACGG-------------CTCCCACTTATTCTACACCTCTC 259 ||||||||||| || |||| ||||||||||| |||||||||| Sbjct 87665 GGTATTTCACTGTCGTAAAAACATATTTCAGTTTCTACTCCCACTTATGCTACACCTCTT 87724 Query 260 AAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGAT 319 ||||| |||||||||| | ||||||||| ||||||||||||||||||||||||||||||| Sbjct 87725 AAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTCAACAGGGTCTTCTTTCCCCGCTGAT 87784 Query 320 TCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA 379 | |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 87785 TTGGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAA 87844 Query 380 TCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAG 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 87845 TCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAG 87904 Query 440 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATT 499 |||||||||||||||||||||||||||| ||||||| ||||||||| ||| |||||||| Sbjct 87905 AGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTTGATTGAATTTCATCAAGTTGACATT 87964 Query 500 CAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTT 539 || ||||||||||||||||||||||| || || | || || Sbjct 87965 CAAAGCACTGGGCAGAAATCACATTGTGTTAATACCAGTT 88004 >seq21 Length=1079809 Score = 482 bits (534), Expect = 8e-134 Identities = 455/580 (78%), Gaps = 49/580 (8%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 984412 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 984353 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCA------ACC 120 ||||||||||||| ||||||||| ||||||||||||||| | ||||| || | Sbjct 984352 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTCTCCATAGAATATG 984293 Query 121 CGG------ATCGGCC--CGCGAAGGACC----TTAACGCCAGAAA-ATGG-----TCGG 162 || | || || |||| | | | |||| | | || ||| | || Sbjct 984292 TGGGAGATAAGCGACCATCGCGGATGGCACTTGTTAATTCAAATAATATGAATTACTTGG 984233 Query 163 TGAAGACCA-GT---------TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGT 212 | ||||| || ||| |||| | ||||||||| ||| ||| ||||| Sbjct 984232 CG--GACCAAGTAAATATATATCCCTTTCAATAGATAAGTAAAACAACTTTAAAAGTAGT 984175 Query 213 GGTATTTCACTTGCGCCGAAACGG-------------CTCCCACTTATTCTACACCTCTC 259 ||||||||||| || |||| ||||||||||| |||||||||| Sbjct 984174 GGTATTTCACTGTCGTAAAAACATATTTCAGTTTCTACTCCCACTTATGCTACACCTCTT 984115 Query 260 AAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGAT 319 ||||| |||||||||| | ||||||||| ||||||||||||||||||||||||||||||| Sbjct 984114 AAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTCAACAGGGTCTTCTTTCCCCGCTGAT 984055 Query 320 TCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA 379 | |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 984054 TTGGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACAGTGGGAA 983995 Query 380 TCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAG 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 983994 TCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAG 983935 Query 440 AGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATT 499 |||||||||||||||||||||||||||| ||||||| ||||||||| ||| |||||||| Sbjct 983934 AGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTTGATTGAATTTCATCAAGTTGACATT 983875 Query 500 CAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTT 539 || ||||||||||||||||||||||| || || | || || Sbjct 983874 CAAAGCACTGGGCAGAAATCACATTGTGTTAATACCAGTT 983835 >seq23 Length=1360573 Score = 455 bits (504), Expect = 1e-125 Identities = 322/369 (87%), Gaps = 12/369 (3%) Strand=Plus/Plus Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG----- 236 || ||||| |||||| |||| ||| |||||||||||||||| || | || Sbjct 97932 ATGGATTA-GTAAAACAACGTTAAAAGTAGTGGTATTTCACTGTCGTAAAGACCTTTCGA 97990 Query 237 ------CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAA 290 ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| || Sbjct 97991 TCTCTACTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAA 98050 Query 291 GCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTT 350 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 98051 GCTCAACAGGGTCTTCTTTCCCCGCTGATTTGGCCAAGCCCGTTCCCTTGGCTGTGGTTT 98110 Query 351 CGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAAT 410 |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 98111 CGCTAGATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAAT 98170 Query 411 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGC 470 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 98171 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGC 98230 Query 471 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 ||||| ||||||||| ||| |||||||||| ||||||||||||||||||||||| || | Sbjct 98231 GCTTGATTGAATTTCATCAAGTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGTTA 98290 Query 531 ACATCACTT 539 | | || || Sbjct 98291 ATACCAGTT 98299 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 97679 CTTTTAGTCTACAAGAGATTTCTGTTCTCTCTGAGCTTGTCTTTGGACATCTGCGTTATT 97738 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 97739 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 97785 >seq16 Length=1982946 Score = 98.7 bits (108), Expect = 3e-18 Identities = 142/200 (71%), Gaps = 19/200 (10%) Strand=Plus/Plus Query 210 AGTGGTATTTCACTTGCGCCGAAACGG--------------CTCCCACTTATTCTACACC 255 |||||||||||||||||| ||||| ||||||||||| |||||| Sbjct 104155 AGTGGTATTTCACTTGCGAGGAAACATTTTTCAGAATTCCTCTCCCACTTATGCTACACA 104214 Query 256 -TCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTT--CCC 312 || ||||| ||| ||| || | || ||||| || |||| ||||||| || | ||| Sbjct 104215 ATCGGAAGTCGTTTTACAGAGCCTACCTGGAGTCGAGTTCAATAGGGTCTCCTATGACCC 104274 Query 313 CGCTGATTCCGCCAAGCCCGTTC--CCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGA 370 |||||| ||||||| ||| |||||| |||||||||||||||| | | |||||| Sbjct 104275 AACTGATTTAACCAAGCCTGTTTTTCCTTGGTTGTGGTTTCGCTAGATTGCAAGTAGGGA 104334 Query 371 CAGTGGGAATCTCGTTAATC 390 ||| |||| | ||| ||| Sbjct 104335 CAGCAGGAAATTTGTTTATC 104354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635199542144