Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20knowlesi_20[genbank_20GCA_5F002140095.1_202017-05-15] 28 sequences; 24,771,595 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq27 140 3e-28 >seq27 Length=1720986 Score = 140 bits (154), Expect = 3e-28 Identities = 393/601 (65%), Gaps = 2/601 (0%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 |||||| || ||||||| ||| | || ||||| ||||| | |||| | | || || | Sbjct 631549 CATAAAAAGGTCAGGTACCCATACAGCATAGAAAAGATCTCTAGCTCTTAGTTCTTCCTT 631490 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 || |||||||| || | || | |||||||| || || | |||||| ||||| | || Sbjct 631489 CCCATGATTTTTACGAAGATCCAAAAACTCAAAAATATCTGAATGCCACGGTTCGATATA 631430 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTT 66519 | ||||| || ||| | | || |||||||||||||| || || | ||| || || Sbjct 631429 CACTGCGAAAGATCCCTTCCTCTTTCCGCCACCTTGGTCTACATATCTAGCTGTATCATT 631370 Query 66520 GAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGA 66579 || || | || ||| ||||| | ||||| ||| | ||||| || || ||| || Sbjct 631369 AAACACTCTCAGCATTGGTACTAATCCGTTGGATATTCCATTCGTTCCTCTAATGTAAGA 631310 Query 66580 TCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGC 66639 | || | | ||||| || || | ||||||||||| || || || || Sbjct 631309 ATTTTGTCCTCTAATATCCTGTACTGCTACTCCAATACCACCAGCTGTTTTGCTAATCAG 631250 Query 66640 AGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAG 66699 || || | | ||| ||| ||||| ||||| || || || ||| ||||| Sbjct 631249 GGCGCACTGTTTTAGAGTCTCGAAAATGCCTTCAATCGAATCTGATTTCATGCAAAGGAG 631190 Query 66700 GTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTG 66759 | |||||| | ||||||| | |||||| | | ||| | ||| ||||| ||||| Sbjct 631189 AAAACATGAAGACATTTGGGGTCTTGGTGTGCCAGAATTGAACAAGGTAGGTGTTGCGTG 631130 Query 66760 CGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCC 66819 |||||| || | ||||||| || ||||||||| | | || | | | | Sbjct 631129 CGTAAAATACTTCTGAGACATCAGATGGTACGTCTCTAACGCTTTTTCCAGATCTCCAAT 631070 Query 66820 ATGAATCCCGAGTGCACA-TCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCT 66878 ||| || |||| || | | || |||||| || | ||| || | || | | | | | Sbjct 631069 ATGGATACCGA-TGGATACTCTCATCAGTAGATGTTGTGGTCTCTCAATAATCTTTCCAT 631011 Query 66879 TGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAAT 66938 | || | | | |||||| | ||||| ||| |||| |||||||| |||||||||| Sbjct 631010 TTATTCGAAGGAGGTAGGATCTTTCCAAGGTTTTGAATCCAAAGTAATCATAATTGAAAT 630951 Query 66939 C 66939 | Sbjct 630950 C 630950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567864329920