Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2886 450 4e-124 seq1896 304 4e-80 seq6786 118 3e-24 >seq2886 Length=3689 Score = 450 bits (498), Expect = 4e-124 Identities = 317/365 (87%), Gaps = 13/365 (4%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG----------- 236 ||||||||| ||| ||| |||||||||||||||| || |||| Sbjct 1760 TAAGTAAAACAACTTTAAAAGTAGTGGTATTTCACTGTCGTAAAAACATATTTCAGTCTC 1701 Query 237 --CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 1700 TACTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTC 1641 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1640 AACAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 1581 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1580 AGATAGCAAGTAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAATTAGA 1521 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1520 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTT 1461 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 | ||||||||| ||| |||||||||| ||||||||||||||||||||||| || || | Sbjct 1460 GATTGAATTTCATCAAGTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGTTAATAC 1401 Query 535 CACTT 539 || || Sbjct 1400 CAGTT 1396 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| ||| ||||| |||||||| Sbjct 1987 CTTTTGGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTAAA 1928 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 1927 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 1881 >seq1896 Length=8495 Score = 304 bits (336), Expect = 4e-80 Identities = 246/295 (83%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTC--AAGCTC 294 ||||||||||| |||||||| | ||||| ||| |||||| | ||||||||| ||||| Sbjct 2937 CTCCCACTTATACTACACCTTTTAAGTCGTTTTACAAAGCCAGACTAGAGTATAAAGCTT 2878 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2877 AACAAGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 2818 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||| | ||||| ||||| |||||| |||||| |||||||| |||||||||||||| Sbjct 2817 AGATAGCAAGTAGGGTCAGTGAGAATCTTATTAATCTATTCATGCTCGTCACTAATTAGA 2758 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATA-GT---TACTCCCGCCGTTTACCCGC 470 ||||||||||||||| || | |||||||||||| || | | |||||| |||| | | Sbjct 2757 TGACGAGGCATTTGGATAACCCAAGAGAGTCATACGTATATTCCCCCGCCATTTATCTGG 2698 Query 471 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525 || | |||||||| || ||| ||||| |||| |||||||||||||||||| Sbjct 2697 GCCTAAATGAATTTCACCAAAATGATATTCAAAGCATTGGGCAGAAATCACATTG 2643 Score = 91.5 bits (100), Expect = 5e-16 Identities = 86/109 (79%), Gaps = 3/109 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| |||| ||||| ||||||| Sbjct 3227 CTTTTGGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGCCTTTGGACATCTGCGTTTAA 3168 Query 67 GTTT---AACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT 112 |||| ||||||||| |||||| || |||| ||||| |||| | |||| Sbjct 3167 GTTTAACAACAGATGTACCGCCCTAGTCAAATTCCCCTCCTGGCTATGT 3119 >seq6786 Length=6288 Score = 118 bits (130), Expect = 3e-24 Identities = 104/127 (82%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || |||||||| |||||||||| ||||||| |||||| | | |||||| | | | || Sbjct 5029 CTTCCACTTATGCTACACCTCTTTTGTCATTTTACAAAGCCATATTAGAGTAATGTTAAA 4970 Query 297 CAG-GGTCTTCTTTCCCCG-CTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 || |||||||||||| | |||||| |||||||||||||||||| |||||||||||| Sbjct 4969 CAAAGGTCTTCTTTCCTCAACTGATTTTACCAAGCCCGTTCCCTTGGTTGTGGTTTCGCT 4910 Query 355 AGATAGT 361 ||||||| Sbjct 4909 AGATAGT 4903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635081120960