Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20malariae_20[genbank_20GCA_5F900088575.1_202016-06-16] 7,270 sequences; 31,925,186 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq5582 219 1e-54 seq4752 141 3e-31 >seq5582 Length=2047 Score = 219 bits (242), Expect = 1e-54 Identities = 186/225 (83%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACCTCCC 63 ||||||||||| ||| ||| ||| | ||| | || ||||| ||||||||||||| | Sbjct 1949 TCATTCCAATTGCAAAACCAAAATTTGGCCTTGCATTGTTATTTCTTGTCACTACCTCTC 1890 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 1889 TTCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 1830 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGG 182 |||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| |||| Sbjct 1829 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGG 1771 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||| || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 1770 CCAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 1726 Score = 131 bits (144), Expect = 5e-28 Identities = 128/163 (79%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | || || | | |||| || | Sbjct 1597 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAAAAAA--AATGTCAAGTAGA 1540 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAGA 460 | ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| | Sbjct 1539 CTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTCA 1480 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 1479 CTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 1437 >seq4752 Length=4367 Score = 141 bits (156), Expect = 3e-31 Identities = 144/184 (78%), Gaps = 9/184 (5%) Strand=Plus/Plus Query 50 TGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATG 109 |||||||||||| | | | |||||||||||| ||||||||||||||||||| |||| Sbjct 3834 TGTCACTACCTCTCTTCTTTAGAATTGGGTAATTTTCGCGCCTGCTGCCTTCCTTAGATG 3893 Query 110 TGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTG 169 | ||||| ||||||||| | ||||||||||||||||| | |||||| ||||||| || Sbjct 3894 TAGTAGCTATTTCTCAGGATACCTCTCCGGAATCGAACTCACATTCCCGGTTACCCCTT- 3952 Query 170 ATA-CCA-----TGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGA 223 ||| ||| || |||| || || |||| | || ||| ||||||| |||||| | || Sbjct 3953 ATAGCCAAAACGTGCTAGGTCAATACCCTAGCGTC--AAGCTGATAGGTCAGAAACTCGA 4010 Query 224 ATGA 227 ||| Sbjct 4011 TTGA 4014 Score = 89.7 bits (98), Expect = 2e-15 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 ||||||| ||||| ||||||||||||||||| |||| | | | ||||| || || Sbjct 4205 ATAACTGTTTTAAGGAGCCATTCGCAGTTTCTGCGTATTTAACGTATGTACTTTCACTTG 4264 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 ||||||||||||| | ||||||||||||| ||||||| Sbjct 4265 CATGGCTTAATCTGTAGGACAAGCATATGAAAACTGGCA 4303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510290193920