Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq125 100 1e-18 seq124 91.5 6e-16 seq2646 87.8 7e-15 seq3748 77.0 1e-11 >seq125 Length=94411 Score = 100 bits (110), Expect = 1e-18 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGG-GAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| |||| | | | || ||||| |||||||||| Sbjct 4225 GAGTCGTGTTCTTTGAGATTGGAGCACTAATGCGTGTGATACATTTCACATAAAGCTAAA 4166 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 ||| | ||||||||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 4165 TATGTGTAGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAATAGGACTCAGG 4106 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || |||| ||||| | || |||||| ||| | | |||| Sbjct 4105 AATGAGAATTAAATATGACCTGAAATCGTTAAGATGGAA 4067 >seq124 Length=5941 Score = 91.5 bits (100), Expect = 6e-16 Identities = 113/151 (75%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| | ||| || | | || ||||| |||||||||| Sbjct 695 GAGTCGTGTTCTTTGAGATTGGAGCACAAAAGTGTGTGATACATTTCACATAAAGCTAAA 754 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 ||| | |||||||||||| ||||||| |||| ||||| ||||| || ||| || Sbjct 755 TATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGGTGAAATAGTACTCAGG 814 Query 158 AAAGAG-AGTTAAAAAGCACGTGAAATTGTT 187 || ||| | ||||| || || |||||| ||| Sbjct 815 AATGAGCAATTAAATAGTACCTGAAATCGTT 845 >seq2646 Length=23038 Score = 87.8 bits (96), Expect = 7e-15 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 78 TAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCG 137 || ||||| | ||||||||||||| | |||||||||||| ||||||| |||| | Sbjct 7278 TAGATTTCATATAAAGCTAAATATATGTAGGAGACCGATAGCAAACAAGTACCGTGAGGG 7337 Query 138 AAAGATGAAA-AGCACTTTGGAAAGAG-AGTTAAAAAGCACGTGAAATTGTT 187 |||||||||| || ||| |||| ||| | |||||||| || |||||| ||| Sbjct 7338 AAAGATGAAATAGAACTCAGGAATGAGCAATTAAAAAGTACCTGAAATCGTT 7389 >seq3748 Length=18378 Score = 77.0 bits (84), Expect = 1e-11 Identities = 82/107 (77%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 82 TTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAG 141 |||| | |||||||||||||| |||||||||||| ||||||| |||| ||||| Sbjct 12776 TTTCATATAAAGCTAAATATTTATAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAG 12717 Query 142 ATGAAAAG-CACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTT 187 | ||| | |||| |||| |||||||||| | || |||||| ||| Sbjct 12716 AATAAATGACACTCAGGAATGAGAGTTAAACTGTACCTGAAATCGTT 12670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079913663750