Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2646 109 1e-21 seq41 109 1e-21 seq125 78.8 2e-12 >seq2646 Length=23038 Score = 109 bits (120), Expect = 1e-21 Identities = 84/100 (84%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| |||||||||| |||||||||||| |||| ||||||||||||||||||||| Sbjct 4679 TCGTGATGGGGATAGATTATTGCAATTATTAATCTTGAACGAGGAATGCCTAGTAAGCAT 4738 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||||| | | ||| ||||||||||||||||||| Sbjct 4739 GATTCATCAGATTGTGCTGACTACGTCCCTGCCCTTTGTA 4778 Score = 93.3 bits (102), Expect = 8e-17 Identities = 82/101 (81%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 4467 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 4526 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||| ||||||||| || ||| ||||||| |||||||||| Sbjct 4527 GATGTCCTTAGATGAACTAGGCTGCACGCGTGCTACACTGA 4567 >seq41 Length=2304 Score = 109 bits (120), Expect = 1e-21 Identities = 84/100 (84%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| |||||||||| |||||||||||| |||| ||||||||||||||||||||| Sbjct 1751 TCGTGATGGGGATAGATTATTGCAATTATTAATCTTGAACGAGGAATGCCTAGTAAGCAT 1692 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||||| | | ||| ||||||||||||||||||| Sbjct 1691 GATTCATCAGATTGTGCTGACTACGTCCCTGCCCTTTGTA 1652 Score = 93.3 bits (102), Expect = 8e-17 Identities = 82/101 (81%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 1963 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 1904 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||| ||||||||| || ||| ||||||| |||||||||| Sbjct 1903 GATGTCCTTAGATGAACTAGGCTGCACGCGTGCTACACTGA 1863 >seq125 Length=94411 Score = 78.8 bits (86), Expect = 2e-12 Identities = 94/128 (73%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 201 AAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGC 260 || || | |||||||| || | | | |||| | |||||| | || |||||| Sbjct 9252 AAAGTGTAGGTAATCTAGTCAGAACATATCGTAATTGGGATAAATTTCTGTAATTATGAA 9193 Query 261 TCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGC 320 | || ||||||||||||||||||||| | ||||||| | | ||| ||||||||||| Sbjct 9192 TTTTGAACGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTGC 9133 Query 321 CCTTTGTA 328 |||||||| Sbjct 9132 CCTTTGTA 9125 Score = 78.8 bits (86), Expect = 2e-12 Identities = 80/102 (78%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGG--CTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||| || || | || || | | |||||||| |||||| |||||||||| Sbjct 9971 GCTTCTTAGAGGTACGATGTGTGCTTAACACAA-GGAAGTTTAAGGCAACAACAGGTCTG 9913 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 | ||| || ||||| | || ||| ||||||| |||||| ||| Sbjct 9912 TAATGTCCCTAGATATACTAGGCTGCACGCGTGCTACAATGA 9871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947161875200