Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq124 453 4e-125 seq125 448 2e-123 seq2646 370 3e-100 >seq124 Length=5941 Score = 453 bits (502), Expect = 4e-125 Identities = 318/365 (87%), Gaps = 13/365 (4%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG----------- 236 ||||||||| ||| ||| |||||||||||||||| || |||| Sbjct 3330 TAAGTAAAACAACTTTAAAAGTAGTGGTATTTCACTGACGTAAAAACATATTTCATTTTC 3271 Query 237 --CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 3270 TACTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTC 3211 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 3210 AACAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 3151 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3150 AGATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 3091 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 3090 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTT 3031 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 | ||||||||| ||| |||||||||| ||||||||||||||||||||||| || || | Sbjct 3030 GATTGAATTTCATCAAGTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGTTAATAC 2971 Query 535 CACTT 539 || || Sbjct 2970 CAGTT 2966 Score = 113 bits (124), Expect = 1e-22 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 3544 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 3485 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 3484 ATTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 3438 >seq125 Length=94411 Score = 448 bits (496), Expect = 2e-123 Identities = 281/303 (93%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||||| Sbjct 1600 CTCCCACTTATACTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTCAA 1659 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1660 CAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 1719 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1720 ATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 1779 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 1780 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTAACCTGCGCTTGA 1839 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536 ||||||||| ||| ||||||||||| ||||||||||||||||||||||| || || | || Sbjct 1840 TTGAATTTCATCAATTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGTTAATACCA 1899 Query 537 CTT 539 || Sbjct 1900 GTT 1902 Score = 107 bits (118), Expect = 6e-21 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 1320 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 1379 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||||| ||||| ||||||||| ||||||||||||||| | ||||| Sbjct 1380 TTTTAACGGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 1426 >seq2646 Length=23038 Score = 370 bits (410), Expect = 3e-100 Identities = 297/358 (83%), Gaps = 15/358 (4%) Strand=Plus/Minus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG-------- 236 ||||| |||||| ||| ||| |||||||||||||||| || |||| Sbjct 9909 GATTA-GTAAAACAACTTTAAAAGTAGTGGTATTTCACTGTCGTAAAAACATATTTCATT 9851 Query 237 -----CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAG 291 ||||||| ||| |||||||||| ||||| |||||||||| | ||||||||| ||| Sbjct 9850 TTCTACTCCCACGTATGCTACACCTCTAAAGTCGTTTCACAAAGCCAGACTAGAGTAAAG 9791 Query 292 CTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351 ||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||| Sbjct 9790 CTCAACAGGGTCTTCTTTCCCCGCTGATTTTACCAAGCCCGTTTCCTTGGTTGTGGTTTC 9731 Query 352 GCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGC-GCGTCACTAAT 410 ||||||||| | ||||||||||||||||||| |||||| ||||||| |||||| ||| Sbjct 9730 GCTAGATAGCAAGTAGGGACAGTGGGAATCTCTTTAATCTGTTCATGCATCGTCACAAAT 9671 Query 411 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGC 470 || ||||||| |||||||| || |||||||||||||||||||||||||||||| ||| | Sbjct 9670 TAAATGACGAAGCATTTGGTTATCTTAAGAGAGTCATAGTTACTCCCGCCGTTAACCTTC 9611 Query 471 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 528 |||| ||||||||| ||| |||||||||| ||||||||||||||||||||||| || Sbjct 9610 GCTTTATTGAATTTCATCAAGTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGT 9553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635134183200