Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2646 228 2e-57 seq416 208 2e-51 seq125 199 1e-48 seq42 132 1e-28 >seq2646 Length=23038 Score = 228 bits (252), Expect = 2e-57 Identities = 188/225 (84%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 ||||||||||||||| ||| ||| ||| ||||| ||||| ||||||||||||| | Sbjct 3368 TCATTCCAATTACAAAACCATGAAATGGCCTTGTATTGTTATTTCTTGTCACTACCTCTC 3309 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 3308 TTCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 3249 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGG 182 |||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| |||| Sbjct 3248 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGG 3190 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||| || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 3189 CCAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 3145 Score = 127 bits (140), Expect = 6e-27 Identities = 129/165 (78%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATA 400 |||| ||||||||| || || || ||||||| |||| ||| | | | |||| || Sbjct 3018 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTGTAAGGTA--GAAATTTCAAGTA 2961 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTA 458 | ||||||| |||||||||| ||||||||||| |||| | | || ||||||| Sbjct 2960 GATTATAACTGTTTTAATGAGCTGTTCGCAGTTTCTACATATAAAATATGCATATACTTT 2901 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || ||||||||||||||||||||||||||||||||||||||||| Sbjct 2900 CACTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 2856 >seq416 Length=10405 Score = 208 bits (230), Expect = 2e-51 Identities = 164/194 (85%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 35 TGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGC 94 ||||| ||||| ||||||||||||| | | | |||||||||||| ||||||||| Sbjct 3 TGTATTGTTATTTCTTGTCACTACCTCTCTTCTTTAGAATTGGGTAATTTACGCGCCTGC 62 Query 95 TGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATT 154 |||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 63 TGCCTTCCTTAGATGTGGTAGCTATTTCTCAGGCTCCCTCTCCGGAATCGAACTCTAATT 122 Query 155 CCCCGTTACCCGTTGATA-CCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGC 213 |||||||||||| | ||| ||||| ||||||| || |||| |||| |||| ||||||| | Sbjct 123 CCCCGTTACCCG-TCATAGCCATGTTAGGCCAATACCCTAACATCAAAAGCTGATAGGTC 181 Query 214 AGAAATTTGAATGA 227 ||||| | || ||| Sbjct 182 AGAAACTCGATTGA 195 Score = 132 bits (146), Expect = 1e-28 Identities = 130/165 (79%), Gaps = 6/165 (4%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATA 400 |||| ||||||||| || || || ||||||| |||| ||| | | | |||| || Sbjct 322 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTGTAAGGTA--GAAATTTCAAGTA 379 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTA 458 | ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| Sbjct 380 GATTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTT 439 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || ||||||||||||||||||||||||||||||||||||||||| Sbjct 440 CACTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 484 >seq125 Length=94411 Score = 199 bits (220), Expect = 1e-48 Identities = 175/214 (82%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 4 CTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 |||| ||||||||||| ||| ||| ||| ||||| || | ||||||||||||| Sbjct 11089 CTCAATCCAATTACAAAACCATGAAATGGCCTTGTATTGTAATATCTTGTCACTACCTCT 11148 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 | | | |||||||||||| ||||||||||||| ||||| ||||||||||| |||| Sbjct 11149 CTTCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCGTCCTTAGATGTGGTAGCTATTTC 11208 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAG 181 ||||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| || Sbjct 11209 TCAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAA 11267 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215 |||| || |||| |||||| || ||||||| ||| Sbjct 11268 GCCAATACCCTAACATCGACAGCTGATAGGTCAG 11301 Score = 123 bits (136), Expect = 8e-26 Identities = 96/112 (86%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCTT 451 |||| || | ||||||| ||||||||||| ||||||||||| ||| | || ||| | Sbjct 11510 TCAAGTAGATTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTGCATATCAAATATGCAT 11569 Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 |||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 11570 ATACTTAGACTTGCATGGCTTAATCTTTTAGACAAGCATATGACTACTGGCA 11621 >seq42 Length=15998 Score = 132 bits (146), Expect = 1e-28 Identities = 130/165 (79%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATA 400 |||| ||||||||| || || || ||||||| |||| ||| | | | |||| || Sbjct 15831 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTGTAAGGTA--GAAATTTCAAGTA 15774 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTA 458 | ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| Sbjct 15773 GATTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTT 15714 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || ||||||||||||||||||||||||||||||||||||||||| Sbjct 15713 CACTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 15669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510339206400