Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088555.1_202016- 06-16] 4,025 sequences; 34,518,662 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq700 113 4e-20 >seq700 Length=13977 Score = 113 bits (124), Expect = 4e-20 Identities = 401/625 (64%), Gaps = 4/625 (1%) Strand=Plus/Plus Query 66008 GCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCG 66067 |||| |||||| | ||| || ||||| | || || || | ||||| |||| ||||| Sbjct 4621 GCAATAGATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCGATTATTTCA 4680 Query 66068 GTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCAT 66127 || |||||||| || || || || ||||| | ||||||| || ||| ||| Sbjct 4681 CAACATAGATTACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGCATTACAT 4740 Query 66128 GCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGC 66187 | ||| || |||| ||| || || || || || | ||| | | || || | Sbjct 4741 GAATCTTTATACAACATATATGGTACACCTGTTTCTATTTGACTTTGTAAAATAGCAAAC 4800 Query 66188 CAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT--TCGTAATGTTCGT 66245 || | | | | || || || | |||| ||| | | || || | ||| | Sbjct 4801 CATAAATCTTGCGCTAATACAGTTTTTTTT--CCTAAATTTTCTTCTTCATATTTTTCAT 4858 Query 66246 AGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACA 66305 | | | ||| || |||||||||| ||| | || |||||| | | |||||||| Sbjct 4859 ATAATTTTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACA 4918 Query 66306 TCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGG 66365 | | | ||||| || | || || | |||||| | ||| |||| ||| | | Sbjct 4919 TTAATGTCCAATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAG 4978 Query 66366 CGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGA 66425 | || || | ||| | |||||| || || | || |||||||| | ||| || || | Sbjct 4979 CATAAAATAAATCTCTAGCTCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAA 5038 Query 66426 ACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGC 66485 ||||||| || || | |||||||||||| | || | || || || || | | ||| | Sbjct 5039 ACTCAAATATATCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTC 5098 Query 66486 CGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCC 66545 | |||||||| || || || | ||| || ||| || || | ||||| ||||| | | Sbjct 5099 CTCCACCTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAATC 5158 Query 66546 CGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACAT 66605 |||| ||| | ||||| || || || || | || | |||||||| || || Sbjct 5159 CGTTTGATATACCATTTGTTCCTCTTATATATGAATTTTGTCCACGTATATCTTGTACTG 5218 Query 66606 TCAGACCAATACCACCGGCCGTCTT 66630 | |||||||||||| || || || Sbjct 5219 CTACACCAATACCACCTGCAGTTTT 5243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397548497426000