Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2140 114 2e-23 seq819 114 2e-23 seq1223 82.4 1e-13 >seq2140 Length=47415 Score = 114 bits (126), Expect = 2e-23 Identities = 102/124 (82%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 1937 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 1880 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||| ||| | | |||||| Sbjct 1879 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTACTGATAAAGAT 1820 Query 119 TACC 122 |||| Sbjct 1819 TACC 1816 Score = 91.5 bits (100), Expect = 2e-16 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||| | | |||| |||||| ||||||| ||| || ||||||||| ||||||||| Sbjct 1739 ACTCGTTTTACATATCATTGTAGCACGCGTGCAGCCTAGTTCATCTAAGGACATCACAGA 1680 Query 207 CCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||| |||||||| || Sbjct 1679 CCTGTTGTTGCCTTAAACTTCCTTG 1655 >seq819 Length=6263 Score = 114 bits (126), Expect = 2e-23 Identities = 102/124 (82%), Gaps = 4/124 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 5630 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 5687 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||| ||| | | |||||| Sbjct 5688 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTACTGATAAAGAT 5747 Query 119 TACC 122 |||| Sbjct 5748 TACC 5751 Score = 95.1 bits (104), Expect = 2e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||| | | ||||||||||| ||||||| ||| || ||||||||| ||||||||| Sbjct 5828 ACTCGTTATACATATCAGTGTAGCACGCGTGCAGCCTAGTTCATCTAAGGACATCACAGA 5887 Query 207 CCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||| |||||||| || Sbjct 5888 CCTGTTGTTGCCTTAAACTTCCTTG 5912 >seq1223 Length=19407 Score = 82.4 bits (90), Expect = 1e-13 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||| | | |||| |||||| ||||||| ||| || | ||||| || ||| ||||| Sbjct 10022 ACTCGTTATACATATCATTGTAGCACGCGTGCAGCCTAGTATATCTAGGGACATTACAGA 10081 Query 207 CCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||| |||||||| || Sbjct 10082 CCTGTTGTTGCCTTAAACTTCCTTG 10106 Score = 77.0 bits (84), Expect = 5e-12 Identities = 81/104 (78%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | | |||||| || |||||||||| | ||| Sbjct 9289 GTACAAAGGGCAGGGACGTAGTCAGCACAATC-TGATGAATCATGCTTACTAGGCA-TTC 9346 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGAT 104 |||||| || | | |||| || || |||||| || ||||| Sbjct 9347 CTCGTTCAAAATTCATAATTACAGAAATTTATCCCAATTACGAT 9390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751983776305