Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2140 109 1e-21 seq1223 100 5e-19 >seq2140 Length=47415 Score = 109 bits (120), Expect = 1e-21 Identities = 186/268 (69%), Gaps = 30/268 (11%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAG---------GCCTTT------GCTCGAA 119 ||||||||| |||||||||||||||||||| || ||| | | ||| Sbjct 804 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAAACAGTTAAAGCATTTTACTGCGTTTGAA 863 Query 120 TACATTAGCATGGAATAATAGAATAGGAC--------GTGCGGTTCTATTTTGTTGGTTT 171 ||| |||||||||||| | ||| | || | | ||||| |||| || ||| Sbjct 864 TACTACAGCATGGAATAACAAAATTGAACAAGTCAGAATTCTGTTCTTTTTTCTTATTTT 923 Query 172 CTAGGACCGCCGTAATGATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGA 230 || | || | |||||||||| ||| | || || | ||||||| ||||||| Sbjct 924 ---GG--CTTAGTTACGATTAATAGGAGTAGCTTGGAGGCATTTGTATTCAGATGTCAGA 978 Query 231 GGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTT 290 |||||||||||| ||||| || |||| ||| ||||||||||| || || | || || Sbjct 979 GGTGAAATTCTTAGATTTTCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTT 1038 Query 291 TCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||| |||||||||||| ||| Sbjct 1039 CCATTAATCA-AGAACGAAAGTTAAGGG 1065 >seq1223 Length=19407 Score = 100 bits (110), Expect = 5e-19 Identities = 185/269 (69%), Gaps = 27/269 (10%) Strand=Plus/Minus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC---------------CTTTGCTCG 117 |||||| |||| ||||||||||||| |||||| | || || | Sbjct 10964 TTTTACCTTGAGTAAATTAGAGTGTTTAAAGCAAACAGATAGAACAGTTTACTGTGTTTA 10905 Query 118 AATACATTAGCATGGAATAATA-----GAAT-AG--GACGTGCGGTTCTATTTTGTTGGT 169 ||||| |||||||||||||| |||| || ||||| | ||| || | ||| | Sbjct 10904 AATACTACAGCATGGAATAATAATATCGAATGAGCCGACGTACTTTTCGTTTCT-TTGTT 10846 Query 170 TTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAG 229 | | || | || | |||||| ||| ||||| ||||| | ||||||| |||||| Sbjct 10845 ATTTTGG--CTTAGTTACGATTAACAGGAATAGTTGGGGGCATTTGTATTCAGATGTCAG 10788 Query 230 AGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTT 289 |||||||||||| |||| || |||| ||| | ||||||||| | | | || || Sbjct 10787 AGGTGAAATTCTAAGATTATCTGGAGACGAACAATTGCGAAAGCATCTGTCTAACATATT 10728 Query 290 TTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||||||||| |||||||||||| ||| Sbjct 10727 TTCATTAATCA-AGAACGAAAGTTAAGGG 10700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915179618496