Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1223 100 1e-18 seq819 95.1 5e-17 seq2140 87.8 7e-15 seq23 77.0 1e-11 >seq1223 Length=19407 Score = 100 bits (110), Expect = 1e-18 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGG-GAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| |||| | | | || ||||| |||||||||| Sbjct 4359 GAGTCGTGTTCTTTGAGATTGGAGCACTAATGCGTGTGATACATTTCACATAAAGCTAAA 4300 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 ||| | ||||||||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 4299 TATGTGTAGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAATAGGACTCAGG 4240 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || |||| ||||| | || |||||| ||| | | |||| Sbjct 4239 AATGAGAATTAAATATGACCTGAAATCGTTAAGATGGAA 4201 >seq819 Length=6263 Score = 95.1 bits (104), Expect = 5e-17 Identities = 114/151 (75%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| | ||| || | | || ||||| |||||||||| Sbjct 3976 GAGTCGTGTTCTTTGAGATTGGAGCACAAAAGTGTGTGATACATTTCACATAAAGCTAAA 3917 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 ||| | |||||||||||| ||||||| |||| ||||| ||||| || ||| || Sbjct 3916 TATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGGTGAAATAGTACTCAGG 3857 Query 158 AAAGAG-AGTTAAAAAGCACGTGAAATTGTT 187 || ||| | |||||||| || |||||| ||| Sbjct 3856 AATGAGCAATTAAAAAGTACCTGAAATCGTT 3826 >seq2140 Length=47415 Score = 87.8 bits (96), Expect = 7e-15 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 78 TAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCG 137 || ||||| | ||||||||||||| | |||||||||||| ||||||| |||| | Sbjct 4436 TAGATTTCATATAAAGCTAAATATATGTAGGAGACCGATAGCAAACAAGTACCGTGAGGG 4495 Query 138 AAAGATGAAA-AGCACTTTGGAAAGAG-AGTTAAAAAGCACGTGAAATTGTT 187 |||||||||| || ||| |||| ||| | |||||||| || |||||| ||| Sbjct 4496 AAAGATGAAATAGAACTCAGGAATGAGCAATTAAAAAGTACCTGAAATCGTT 4547 >seq23 Length=215479 Score = 77.0 bits (84), Expect = 1e-11 Identities = 82/107 (77%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 82 TTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAG 141 |||| | |||||||||||||| |||||||||||| ||||||| |||| ||||| Sbjct 199853 TTTCATATAAAGCTAAATATTTATAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAG 199794 Query 142 ATGAAAAG-CACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTT 187 | ||| | |||| |||| |||||||||| | || |||||| ||| Sbjct 199793 AATAAATGACACTCAGGAATGAGAGTTAAACTGTACCTGAAATCGTT 199747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079952230850