Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq2188 159 7e-37 seq679 95.1 3e-17 >seq2188 Length=13942 Score = 159 bits (176), Expect = 7e-37 Identities = 254/362 (70%), Gaps = 12/362 (3%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | |||||| || | || || |||||| || ||||| Sbjct 13477 GCATCTTCACAGATAATTTTATTTCATTAAGATTTTTTTTAAGACAGCATTTAAGTCGTT 13418 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || ||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 13417 ACATCTTTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTTGGACCGTTA 13358 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATT----GCTCTAACAG 182 ||| ||| ||||||||||||| ||||| | | | | ||| | ||| | Sbjct 13357 TAGATACAGCCGCCGTTTACTATAGCTTATATATA-TATTATAATTTTAAATTATAA-AT 13300 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 || || || | ||||| |||||| |||| |||||||| |||| ||| ||| Sbjct 13299 ATTATTTTTACATAATAGCACTGGGCAGATGTCAATCTTTATACATCATCTTTCGATTTA 13240 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAG 302 ||| | | |||||||||| ||||||||||||| | || | | | | || Sbjct 13239 GCAAAGATTTGTGTTTTTGTTAAACAGTCGCTTAAATTTTTTATTTTCAAC------TAA 13186 Query 303 ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTC 362 | | | | | ||||||||||||||| | | | ||||||||||||||||| || | || Sbjct 13185 ATAAGTATCTTTTCTCCCTAAGTTACAAGATAAATTTGCCGAGTTCCTTAAAAAAAATTA 13126 Query 363 TC 364 || Sbjct 13125 TC 13124 >seq679 Length=6273 Score = 95.1 bits (104), Expect = 3e-17 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 59 AAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 118 || ||||||| || ||| ||| || |||| |||||||||||||||||| |||||||||| Sbjct 5092 AAGTCGTTACACCGTTCATGCAGGACGGAGATTACCCGACAAGGAATTTTGCTACCTTAG 5151 Query 119 GACCGTTATAGTTACGGCCGCCGTTTA 145 ||||||| | ||| ||||||||||| Sbjct 5152 GACCGTTTACGATACAGCCGCCGTTTA 5178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062376340352