Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2140 109 1e-21 seq819 109 1e-21 seq1223 78.8 2e-12 >seq2140 Length=47415 Score = 109 bits (120), Expect = 1e-21 Identities = 84/100 (84%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| |||||||||| |||||||||||| |||| ||||||||||||||||||||| Sbjct 1837 TCGTGATGGGGATAGATTATTGCAATTATTAATCTTGAACGAGGAATGCCTAGTAAGCAT 1896 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||||| | | ||| ||||||||||||||||||| Sbjct 1897 GATTCATCAGATTGTGCTGACTACGTCCCTGCCCTTTGTA 1936 Score = 89.7 bits (98), Expect = 1e-15 Identities = 81/101 (80%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 1625 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 1684 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||| ||||||||| || ||| ||||||| |||||| ||| Sbjct 1685 GATGTCCTTAGATGAACTAGGCTGCACGCGTGCTACAATGA 1725 >seq819 Length=6263 Score = 109 bits (120), Expect = 1e-21 Identities = 84/100 (84%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| |||||||||| |||||||||||| |||| ||||||||||||||||||||| Sbjct 5730 TCGTGATGGGGATAGATTATTGCAATTATTAATCTTGAACGAGGAATGCCTAGTAAGCAT 5671 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||||| | | ||| ||||||||||||||||||| Sbjct 5670 GATTCATCAGATTGTGCTGACTACGTCCCTGCCCTTTGTA 5631 Score = 93.3 bits (102), Expect = 8e-17 Identities = 82/101 (81%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 5942 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 5883 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||| ||||||||| || ||| ||||||| |||||||||| Sbjct 5882 GATGTCCTTAGATGAACTAGGCTGCACGCGTGCTACACTGA 5842 >seq1223 Length=19407 Score = 78.8 bits (86), Expect = 2e-12 Identities = 94/128 (73%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 201 AAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGC 260 || || | |||||||| || | | | |||| | |||||| | || |||||| Sbjct 9417 AAAGTGTAGGTAATCTAGTCAGAACATATCGTAATTGGGATAAATTTCTGTAATTATGAA 9358 Query 261 TCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGC 320 | || ||||||||||||||||||||| | ||||||| | | ||| ||||||||||| Sbjct 9357 TTTTGAACGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTGC 9298 Query 321 CCTTTGTA 328 |||||||| Sbjct 9297 CCTTTGTA 9290 Score = 78.8 bits (86), Expect = 2e-12 Identities = 80/102 (78%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGG--CTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||| || || | || || | | |||||||| |||||| |||||||||| Sbjct 10136 GCTTCTTAGAGGTACGATGTGTGCTTAACACAA-GGAAGTTTAAGGCAACAACAGGTCTG 10078 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 | ||| || ||||| | || ||| ||||||| |||||| ||| Sbjct 10077 TAATGTCCCTAGATATACTAGGCTGCACGCGTGCTACAATGA 10036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947178905856