Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq819 453 4e-125 seq1223 448 2e-123 seq2140 370 3e-100 >seq819 Length=6263 Score = 453 bits (502), Expect = 4e-125 Identities = 318/365 (87%), Gaps = 13/365 (4%) Strand=Plus/Plus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG----------- 236 ||||||||| ||| ||| |||||||||||||||| || |||| Sbjct 1341 TAAGTAAAACAACTTTAAAAGTAGTGGTATTTCACTGTCGTAAAAACATATTTCATTTTC 1400 Query 237 --CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 1401 TACTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTC 1460 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1461 AACAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 1520 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1521 AGATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 1580 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1581 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTT 1640 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 | ||||||||| ||| |||||||||| ||||||||||||||||||||||| || || | Sbjct 1641 GATTGAATTTCATCAAGTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGTTAATAC 1700 Query 535 CACTT 539 || || Sbjct 1701 CAGTT 1705 Score = 113 bits (124), Expect = 1e-22 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 1127 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 1186 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 1187 ATTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 1233 >seq1223 Length=19407 Score = 448 bits (496), Expect = 2e-123 Identities = 281/303 (93%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||||| Sbjct 1734 CTCCCACTTATACTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTCAA 1793 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1794 CAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 1853 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1854 ATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 1913 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 1914 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTAACCTGCGCTTGA 1973 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536 ||||||||| ||| ||||||||||| ||||||||||||||||||||||| || || | || Sbjct 1974 TTGAATTTCATCAATTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGTTAATACCA 2033 Query 537 CTT 539 || Sbjct 2034 GTT 2036 Score = 107 bits (118), Expect = 6e-21 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 1454 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 1513 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||||| ||||| ||||||||| ||||||||||||||| | ||||| Sbjct 1514 TTTTAACGGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 1560 >seq2140 Length=47415 Score = 370 bits (410), Expect = 3e-100 Identities = 297/358 (83%), Gaps = 15/358 (4%) Strand=Plus/Minus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG-------- 236 ||||| |||||| ||| ||| |||||||||||||||| || |||| Sbjct 7069 GATTA-GTAAAACAACTTTAAAAGTAGTGGTATTTCACTGTCGTAAAAACATATTTCATT 7011 Query 237 -----CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAG 291 ||||||| ||| |||||||||| ||||| |||||||||| | ||||||||| ||| Sbjct 7010 TTCTACTCCCACGTATGCTACACCTCTAAAGTCGTTTCACAAAGCCAGACTAGAGTAAAG 6951 Query 292 CTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTC 351 ||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||| Sbjct 6950 CTCAACAGGGTCTTCTTTCCCCGCTGATTTTACCAAGCCCGTTTCCTTGGTTGTGGTTTC 6891 Query 352 GCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGC-GCGTCACTAAT 410 ||||||||| | ||||||||||||||||||| |||||| ||||||| |||||| ||| Sbjct 6890 GCTAGATAGCAAGTAGGGACAGTGGGAATCTCTTTAATCTGTTCATGCATCGTCACAAAT 6831 Query 411 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGC 470 || ||||||| |||||||| || |||||||||||||||||||||||||||||| ||| | Sbjct 6830 TAAATGACGAAGCATTTGGTTATCTTAAGAGAGTCATAGTTACTCCCGCCGTTAACCTTC 6771 Query 471 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 528 |||| ||||||||| ||| |||||||||| ||||||||||||||||||||||| || Sbjct 6770 GCTTTATTGAATTTCATCAAGTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGT 6713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635163584096