Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2140 228 2e-57 seq80 228 2e-57 seq24 228 2e-57 seq1223 199 1e-48 seq2164 149 2e-33 >seq2140 Length=47415 Score = 228 bits (252), Expect = 2e-57 Identities = 188/225 (84%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 ||||||||||||||| ||| ||| ||| ||||| ||||| ||||||||||||| | Sbjct 526 TCATTCCAATTACAAAACCATGAAATGGCCTTGTATTGTTATTTCTTGTCACTACCTCTC 467 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 466 TTCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 407 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGG 182 |||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| |||| Sbjct 406 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGG 348 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||| || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 347 CCAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 303 Score = 132 bits (146), Expect = 1e-28 Identities = 130/165 (79%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATA 400 |||| ||||||||| || || || ||||||| |||| ||| | | | |||| || Sbjct 176 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTGTAAGGTA--GAAATTTCAAGTA 119 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTA 458 | ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| Sbjct 118 GATTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTT 59 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || ||||||||||||||||||||||||||||||||||||||||| Sbjct 58 CACTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 14 >seq80 Length=33588 Score = 228 bits (252), Expect = 2e-57 Identities = 188/225 (84%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 ||||||||||||||| ||| ||| ||| ||||| ||||| ||||||||||||| | Sbjct 227 TCATTCCAATTACAAAACCATGAAATGGCCTTGTATTGTTATTTCTTGTCACTACCTCTC 286 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 287 TTCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 346 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGG 182 |||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| |||| Sbjct 347 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGG 405 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||| || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 406 CCAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 450 Score = 136 bits (150), Expect = 1e-29 Identities = 131/166 (79%), Gaps = 8/166 (5%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTA---TCAAAT 399 |||| ||||||||| || || || ||||||| |||| |||||| | |||| | Sbjct 577 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTGTA---AGGTACAAATTTCAAGT 633 Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTT 457 | | ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| Sbjct 634 AGATTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTT 693 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || ||||||||||||||||||||||||||||||||||||||||| Sbjct 694 TCACTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 739 >seq24 Length=46442 Score = 228 bits (252), Expect = 2e-57 Identities = 188/225 (84%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 ||||||||||||||| ||| ||| ||| ||||| ||||| ||||||||||||| | Sbjct 46280 TCATTCCAATTACAAAACCATGAAATGGCCTTGTATTGTTATTTCTTGTCACTACCTCTC 46221 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 46220 TTCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 46161 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGG 182 |||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| |||| Sbjct 46160 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGG 46102 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||| || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 46101 CCAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 46057 Score = 132 bits (146), Expect = 1e-28 Identities = 130/165 (79%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATA 400 |||| ||||||||| || || || ||||||| |||| ||| | | | |||| || Sbjct 45930 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTGTAAGGTA--GAAATTTCAAGTA 45873 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTA 458 | ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| Sbjct 45872 GATTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTT 45813 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || ||||||||||||||||||||||||||||||||||||||||| Sbjct 45812 CACTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 45768 >seq1223 Length=19407 Score = 199 bits (220), Expect = 1e-48 Identities = 175/214 (82%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 4 CTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 |||| ||||||||||| ||| ||| ||| ||||| || | ||||||||||||| Sbjct 11254 CTCAATCCAATTACAAAACCATGAAATGGCCTTGTATTGTAATATCTTGTCACTACCTCT 11313 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 | | | |||||||||||| ||||||||||||| ||||| ||||||||||| |||| Sbjct 11314 CTTCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCGTCCTTAGATGTGGTAGCTATTTC 11373 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAG 181 ||||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| || Sbjct 11374 TCAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAA 11432 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215 |||| || |||| |||||| || ||||||| ||| Sbjct 11433 GCCAATACCCTAACATCGACAGCTGATAGGTCAG 11466 Score = 123 bits (136), Expect = 8e-26 Identities = 96/112 (86%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCTT 451 |||| || | ||||||| ||||||||||| ||||||||||| ||| | || ||| | Sbjct 11675 TCAAGTAGATTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTGCATATCAAATATGCAT 11734 Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 |||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 11735 ATACTTAGACTTGCATGGCTTAATCTTTTAGACAAGCATATGACTACTGGCA 11786 >seq2164 Length=4075 Score = 149 bits (164), Expect = 2e-33 Identities = 112/129 (87%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 100 TCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCG 159 ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 4075 TCCTTAGATGTGGTAGCTATTTCTCAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCG 4016 Query 160 TTACCCGTTGATA-CCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAA 218 ||||||| | ||| ||||| ||||||| || |||| |||| |||| ||||||| |||||| Sbjct 4015 TTACCCG-TCATAGCCATGTTAGGCCAATACCCTAACATCAAAAGCTGATAGGTCAGAAA 3957 Query 219 TTTGAATGA 227 | || ||| Sbjct 3956 CTCGATTGA 3948 Score = 132 bits (146), Expect = 1e-28 Identities = 130/165 (79%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATA 400 |||| ||||||||| || || || ||||||| |||| ||| | | | |||| || Sbjct 3821 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTGTAAGGTA--GAAATTTCAAGTA 3764 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTA 458 | ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| Sbjct 3763 GATTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTT 3704 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || ||||||||||||||||||||||||||||||||||||||||| Sbjct 3703 CACTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 3659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510366363392