Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20curtisi_20[genbank_20GCA_5F900088565.1_202016- 06-16] 2,227 sequences; 38,010,039 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq546 113 4e-20 >seq546 Length=57643 Score = 113 bits (124), Expect = 4e-20 Identities = 401/625 (64%), Gaps = 4/625 (1%) Strand=Plus/Plus Query 66008 GCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCG 66067 |||| |||||| | ||| || ||||| | || || || | ||||| |||| ||||| Sbjct 5131 GCAATAGATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCGATTATTTCA 5190 Query 66068 GTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCAT 66127 || |||||||| || || || || ||||| | ||||||| || ||| ||| Sbjct 5191 CAACATAGATTACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGCATTACAT 5250 Query 66128 GCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGC 66187 | ||| || |||| ||| || || || || || | ||| | | || || | Sbjct 5251 GAATCTTTATACAACATATATGGTACACCTGTTTCTATTTGACTTTGTAAAATAGCAAAC 5310 Query 66188 CAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT--TCGTAATGTTCGT 66245 || | | | | || || || | |||| ||| | | || || | ||| | Sbjct 5311 CATAAATCTTGCGCTAATACAGTTTTTTTT--CCTAAATTTTCTTCTTCATATTTTTCAT 5368 Query 66246 AGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACA 66305 | | | ||| || |||||||||| ||| | || |||||| | | |||||||| Sbjct 5369 ATAATTTTTCAAATTCTTCACCCCATGTTTCACTTAAACCTGGACATTCATTTGGACACA 5428 Query 66306 TCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGG 66365 | | | ||||| || | || || | |||||| | ||| |||| ||| | | Sbjct 5429 TTAATGTCCAATTTTTATTTTCTTTAACTCTTTTCATAAACAAATCTGGTACCCAAACAG 5488 Query 66366 CGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGA 66425 | || || | ||| | |||||| || || | || |||||||| | ||| || || | Sbjct 5489 CATAAAATAAATCTCTAGCTCGTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAA 5548 Query 66426 ACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGC 66485 ||||||| || || | |||||||||||| | || | || || || || | | ||| | Sbjct 5549 ACTCAAATATATCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTC 5608 Query 66486 CGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCC 66545 | |||||||| || || || | ||| || ||| || || | ||||| ||||| | | Sbjct 5609 CTCCACCTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAATC 5668 Query 66546 CGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACAT 66605 |||| ||| | ||||| || || || || | || | |||||||| || || Sbjct 5669 CGTTTGATATACCATTTGTTCCTCTTATATATGAATTTTGTCCACGTATATCTTGTACTG 5728 Query 66606 TCAGACCAATACCACCGGCCGTCTT 66630 | |||||||||||| || || || Sbjct 5729 CTACACCAATACCACCTGCAGTTTT 5753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397557209383280