Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1210 120 5e-25 seq910 95.1 2e-17 seq247 95.1 2e-17 seq1914 84.2 3e-14 seq1494 84.2 3e-14 seq5 82.4 1e-13 >seq1210 Length=2209 Score = 120 bits (132), Expect = 5e-25 Identities = 111/137 (81%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 1708 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 1765 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||| ||| | | |||||| Sbjct 1766 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTACTGATAAAGAT 1825 Query 119 TACCCGGACCTGTCGGC 135 |||| |||| ||||| Sbjct 1826 TACCTACACCTTTCGGC 1842 Score = 95.1 bits (104), Expect = 2e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||| | | ||||||||||| ||||||| ||| || ||||||||| ||||||||| Sbjct 1903 ACTCGTTATACATATCAGTGTAGCACGCGTGCAGCCTAGTTCATCTAAGGACATCACAGA 1962 Query 207 CCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||| |||||||| || Sbjct 1963 CCTGTTGTTGCCTTAAACTTCCTTG 1987 >seq910 Length=1710 Score = 95.1 bits (104), Expect = 2e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||| | | ||||||||||| ||||||| ||| || ||||||||| ||||||||| Sbjct 160 ACTCGTTATACATATCAGTGTAGCACGCGTGCAGCCTAGTTCATCTAAGGACATCACAGA 219 Query 207 CCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||| |||||||| || Sbjct 220 CCTGTTGTTGCCTTAAACTTCCTTG 244 Score = 80.6 bits (88), Expect = 4e-13 Identities = 75/93 (81%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 45 GCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-- 102 |||||||||| ||| ||||||| |||| || ||||||||| |||||||||||||||| Sbjct 8 GCTTACTAGGCATT-CCTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGAT 66 Query 103 ATGAAATTTCAAAGATTACCCGGACCTGTCGGC 135 ||| | | |||||||||| |||| ||||| Sbjct 67 ATGTACTGATAAAGATTACCTACACCTTTCGGC 99 >seq247 Length=752 Score = 95.1 bits (104), Expect = 2e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||| | | ||||||||||| ||||||| ||| || ||||||||| ||||||||| Sbjct 160 ACTCGTTATACATATCAGTGTAGCACGCGTGCAGCCTAGTTCATCTAAGGACATCACAGA 219 Query 207 CCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||| |||||||| || Sbjct 220 CCTGTTGTTGCCTTAAACTTCCTTG 244 Score = 80.6 bits (88), Expect = 4e-13 Identities = 75/93 (81%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 45 GCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-- 102 |||||||||| ||| ||||||| |||| || ||||||||| |||||||||||||||| Sbjct 8 GCTTACTAGGCATT-CCTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGAT 66 Query 103 ATGAAATTTCAAAGATTACCCGGACCTGTCGGC 135 ||| | | |||||||||| |||| ||||| Sbjct 67 ATGTACTGATAAAGATTACCTACACCTTTCGGC 99 >seq1914 Length=569460 Score = 84.2 bits (92), Expect = 3e-14 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | | |||||| || |||||||||| | ||| Sbjct 569376 GTACAAAGGGCAGGGACGTAGTCAGCACAATC-TGATGAATCATGCTTACTAGGCA-TTC 569433 Query 61 CTCGTTGAAGACCAACAATTGCAAT 85 |||||| |||| || ||||||||| Sbjct 569434 CTCGTTCAAGATTAATAATTGCAAT 569458 >seq1494 Length=1792 Score = 84.2 bits (92), Expect = 3e-14 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | | |||||| || |||||||||| | ||| Sbjct 85 GTACAAAGGGCAGGGACGTAGTCAGCACAATC-TGATGAATCATGCTTACTAGGCA-TTC 28 Query 61 CTCGTTGAAGACCAACAATTGCAAT 85 |||||| |||| || ||||||||| Sbjct 27 CTCGTTCAAGATTAATAATTGCAAT 3 >seq5 Length=19578 Score = 82.4 bits (90), Expect = 1e-13 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||| | | |||| |||||| ||||||| ||| || | ||||| || ||| ||||| Sbjct 8829 ACTCGTTATACATATCATTGTAGCACGCGTGCAGCCTAGTATATCTAGGGACATTACAGA 8888 Query 207 CCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||| |||||||| || Sbjct 8889 CCTGTTGTTGCCTTAAACTTCCTTG 8913 Score = 77.0 bits (84), Expect = 5e-12 Identities = 81/104 (78%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | | |||||| || |||||||||| | ||| Sbjct 8217 GTACAAAGGGCAGGGACGTAGTCAGCACAATC-TGATGAATCATGCTTACTAGGCA-TTC 8274 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGAT 104 |||||| || | | |||| || || |||||| || ||||| Sbjct 8275 CTCGTTCAAAATTCATAATTACAGAAATTTATCCCAATTACGAT 8318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751986056510