Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq5 104 1e-19 seq1784 100 1e-18 seq1494 100 1e-18 seq1210 100 1e-18 seq1914 80.6 1e-12 >seq5 Length=19578 Score = 104 bits (114), Expect = 1e-19 Identities = 120/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| |||| ||| | | || ||||| |||||||||| Sbjct 3038 GAGTCGTGTTCTTTGAGATTGGAGCACTAATATGTGTGATACATTTCACATAAAGCTAAA 2979 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 ||| | |||||||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 2978 TATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGGACTCAGG 2919 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || |||| ||||| | || |||||| ||| | | |||| Sbjct 2918 AATGAGAATTAAATATGACCTGAAATCGTTAAGATGGAA 2880 >seq1784 Length=292177 Score = 100 bits (110), Expect = 1e-18 Identities = 115/151 (76%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGG-GAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| |||| | | | | || ||||| |||||||||| Sbjct 292083 GAGTCGTGTTCTTTGAGATTGGAGCACTAATTTGTGTGATACATTTCACATAAAGCTAAA 292024 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 ||| | |||||||||||| ||||||| |||| ||||||||||| |||||| || Sbjct 292023 TATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGCACTCAGG 291964 Query 158 AAAGAG-AGTTAAAAAGCACGTGAAATTGTT 187 || ||| | ||||| || || |||||| ||| Sbjct 291963 AATGAGCAATTAAATAGTACCTGAAATCGTT 291933 >seq1494 Length=1792 Score = 100 bits (110), Expect = 1e-18 Identities = 115/151 (76%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGG-GAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| |||| | | | | || ||||| |||||||||| Sbjct 1638 GAGTCGTGTTCTTTGAGATTGGAGCACTAATTTGTGTGATACATTTCACATAAAGCTAAA 1697 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 ||| | |||||||||||| ||||||| |||| ||||||||||| |||||| || Sbjct 1698 TATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGCACTCAGG 1757 Query 158 AAAGAG-AGTTAAAAAGCACGTGAAATTGTT 187 || ||| | ||||| || || |||||| ||| Sbjct 1758 AATGAGCAATTAAATAGTACCTGAAATCGTT 1788 >seq1210 Length=2209 Score = 100 bits (110), Expect = 1e-18 Identities = 115/151 (76%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGG-GAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| |||| | | | | || ||||| |||||||||| Sbjct 155 GAGTCGTGTTCTTTGAGATTGGAGCACTAATTTGTGTGATACATTTCACATAAAGCTAAA 96 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 ||| | |||||||||||| ||||||| |||| ||||||||||| |||||| || Sbjct 95 TATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGCACTCAGG 36 Query 158 AAAGAG-AGTTAAAAAGCACGTGAAATTGTT 187 || ||| | ||||| || || |||||| ||| Sbjct 35 AATGAGCAATTAAATAGTACCTGAAATCGTT 5 >seq1914 Length=569460 Score = 80.6 bits (88), Expect = 1e-12 Identities = 80/101 (79%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 89 TAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA- 147 ||||||||||||| | ||||||||||| | ||||||| |||| ||||||||||| Sbjct 566792 TAAAGCTAAATATGTGTAGGAGACCGATAGAGAACAAGTACCGTGAGGGAAAGATGAAAT 566733 Query 148 AGCACTTTGGAAAGAG-AGTTAAAAAGCACGTGAAATTGTT 187 || ||| |||| ||| | |||||||| || |||||| ||| Sbjct 566732 AGAACTCAGGAATGAGCAATTAAAAAGTACCTGAAATCGTT 566692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079958944700