Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1210 116 7e-24 seq247 93.3 8e-17 seq1914 89.7 1e-15 seq1494 89.7 1e-15 seq910 89.7 1e-15 seq5 78.8 2e-12 >seq1210 Length=2209 Score = 116 bits (128), Expect = 7e-24 Identities = 107/134 (80%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAAT 254 |||| ||||| | ||||||||| | | | | ||||| |||||||||| |||||||| Sbjct 1842 GCCGAAAGGTGTAGGTAATCTTTATCAGTACATATCGTGATGGGGATAGATTATTGCAAT 1783 Query 255 TATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGT 314 |||| |||| ||||||||||||||||||||| | ||||||| | | ||| ||||| Sbjct 1782 TATTAATCTTGAACGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGT 1723 Query 315 CCCTGCCCTTTGTA 328 |||||||||||||| Sbjct 1722 CCCTGCCCTTTGTA 1709 Score = 93.3 bits (102), Expect = 8e-17 Identities = 82/101 (81%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 2017 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 1958 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||| ||||||||| || ||| ||||||| |||||||||| Sbjct 1957 GATGTCCTTAGATGAACTAGGCTGCACGCGTGCTACACTGA 1917 >seq247 Length=752 Score = 93.3 bits (102), Expect = 8e-17 Identities = 82/101 (81%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 274 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 215 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||| ||||||||| || ||| ||||||| |||||||||| Sbjct 214 GATGTCCTTAGATGAACTAGGCTGCACGCGTGCTACACTGA 174 Score = 86.0 bits (94), Expect = 1e-14 Identities = 75/92 (82%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAAT 254 |||| ||||| | ||||||||| | | | | ||||| |||||||||| |||||||| Sbjct 99 GCCGAAAGGTGTAGGTAATCTTTATCAGTACATATCGTGATGGGGATAGATTATTGCAAT 40 Query 255 TATTGCTCTTCAACGAGGAATGCCTAGTAAGC 286 |||| |||| ||||||||||||||||||||| Sbjct 39 TATTAATCTTGAACGAGGAATGCCTAGTAAGC 8 >seq1914 Length=569460 Score = 89.7 bits (98), Expect = 1e-15 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 |||||||||||| |||| ||||||||||||||||||||| | ||||||| | | | Sbjct 569458 ATTGCAATTATTAATCTTGAACGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCT 569399 Query 307 GATTACGTCCCTGCCCTTTGTA 328 || ||||||||||||||||||| Sbjct 569398 GACTACGTCCCTGCCCTTTGTA 569377 >seq1494 Length=1792 Score = 89.7 bits (98), Expect = 1e-15 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 |||||||||||| |||| ||||||||||||||||||||| | ||||||| | | | Sbjct 3 ATTGCAATTATTAATCTTGAACGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCT 62 Query 307 GATTACGTCCCTGCCCTTTGTA 328 || ||||||||||||||||||| Sbjct 63 GACTACGTCCCTGCCCTTTGTA 84 >seq910 Length=1710 Score = 89.7 bits (98), Expect = 1e-15 Identities = 81/101 (80%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | | | | | |||||||| |||||| ||||||||||| Sbjct 274 GCTTCTTAGAGGAACGATGTGTGTATAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 215 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||| ||||||||| || ||| ||||||| |||||||||| Sbjct 214 GATGTCCTTAGATGAACTAGGCTGCACGCGTGCTACACTGA 174 Score = 86.0 bits (94), Expect = 1e-14 Identities = 75/92 (82%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAAT 254 |||| ||||| | ||||||||| | | | | ||||| |||||||||| |||||||| Sbjct 99 GCCGAAAGGTGTAGGTAATCTTTATCAGTACATATCGTGATGGGGATAGATTATTGCAAT 40 Query 255 TATTGCTCTTCAACGAGGAATGCCTAGTAAGC 286 |||| |||| ||||||||||||||||||||| Sbjct 39 TATTAATCTTGAACGAGGAATGCCTAGTAAGC 8 >seq5 Length=19578 Score = 78.8 bits (86), Expect = 2e-12 Identities = 94/128 (73%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 201 AAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGC 260 || || | |||||||| || | | | |||| | |||||| | || |||||| Sbjct 8345 AAAGTGTAGGTAATCTAGTCAGAACATATCGTAATTGGGATAAATTTCTGTAATTATGAA 8286 Query 261 TCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGC 320 | || ||||||||||||||||||||| | ||||||| | | ||| ||||||||||| Sbjct 8285 TTTTGAACGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTGC 8226 Query 321 CCTTTGTA 328 |||||||| Sbjct 8225 CCTTTGTA 8218 Score = 78.8 bits (86), Expect = 2e-12 Identities = 80/102 (78%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGG--CTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||| || || | || || | | |||||||| |||||| |||||||||| Sbjct 8943 GCTTCTTAGAGGTACGATGTGTGCTTAACACAA-GGAAGTTTAAGGCAACAACAGGTCTG 8885 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 | ||| || ||||| | || ||| ||||||| |||||| ||| Sbjct 8884 TAATGTCCCTAGATATACTAGGCTGCACGCGTGCTACAATGA 8843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947181870592