Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1784 453 4e-125 seq5 448 2e-123 seq1914 331 3e-88 >seq1784 Length=292177 Score = 453 bits (502), Expect = 4e-125 Identities = 318/365 (87%), Gaps = 13/365 (4%) Strand=Plus/Plus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG----------- 236 ||||||||| ||| ||| |||||||||||||||| || |||| Sbjct 289441 TAAGTAAAACAACTTTAAAAGTAGTGGTATTTCACTGTCGTAAAAACATATTTCAGTTTC 289500 Query 237 --CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 289501 TACTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTC 289560 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 289561 AACAGGGTCTTCTTTCCCCGCTGATTATGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 289620 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 289621 AGATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 289680 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 289681 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTT 289740 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 | ||||||||| ||| |||||||||| ||||||||||||||||||||||| || || | Sbjct 289741 GATTGAATTTCATCAAGTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGTTAATAC 289800 Query 535 CACTT 539 || || Sbjct 289801 CAGTT 289805 Score = 113 bits (124), Expect = 1e-22 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 289222 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 289281 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 289282 ATTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 289328 >seq5 Length=19578 Score = 448 bits (496), Expect = 2e-123 Identities = 281/303 (93%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||||| Sbjct 407 CTCCCACTTATACTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTCAA 466 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 467 CAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 526 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 527 ATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 586 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 587 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTAACCTGCGCTTGA 646 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536 ||||||||| ||| ||||||||||| ||||||||||||||||||||||| || || | || Sbjct 647 TTGAATTTCATCAATTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGTTAATACCA 706 Query 537 CTT 539 || Sbjct 707 GTT 709 Score = 107 bits (118), Expect = 6e-21 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 127 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 186 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||||| ||||| ||||||||| ||||||||||||||| | ||||| Sbjct 187 TTTTAACGGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 233 >seq1914 Length=569460 Score = 331 bits (366), Expect = 3e-88 Identities = 261/310 (84%), Gaps = 7/310 (2%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||||| Sbjct 564258 CTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTCAA 564317 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||| |||||||||||||||||| |||||| ||||| |||||| |||||||||||||| Sbjct 564318 CAGGGCCTTCTTTCCCCGCTGATTATGCCAAGTCCGTTTCCTTGGTTGTGGTTTCGCTAG 564377 Query 357 ATAGTAGATAGGGACAGTGGGAA--TCTCGTTAATCCATTCATGC-GCGTCACTAATTAG 413 || | | ||||||||||||||| |||| ||||||| ||||||| ||||| ||||| Sbjct 564378 ATGGCAAGTAGGGACAGTGGGAATCTCTCCTTAATCCTTTCATGCATTGTCACAAATTAA 564437 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT----AGTTACTCCCGCCGTTTACCCG 469 |||||| |||||||||| ||||||||| |||| | ||||||||||||| ||| | Sbjct 564438 TTGACGAAGCATTTGGCTCTCTTAAGAGAATCATATAGATATACTCCCGCCGTTAACCTG 564497 Query 470 CGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTC 529 |||||| | ||||||| ||| |||||||||| ||||||||||||||||||||||| || Sbjct 564498 CGCTTGATGGAATTTCATCAAATTGACATTCAAAGCACTGGGCAGAAATCACATTGTGTT 564557 Query 530 AACATCACTT 539 || | || || Sbjct 564558 AATACCAGTT 564567 Score = 77.0 bits (84), Expect = 1e-11 Identities = 77/99 (78%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTA-TG 66 |||| |||||| ||||||||||||||| |||| ||| | ||| |||| ||| || Sbjct 563970 TTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGTACATCTGCTTTATTG 564029 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 |||||||||| | |||||| | | ||||||||||||| Sbjct 564030 TTTTAACAGATATACCGCCCGAATCTAACTCCCCACCTG 564068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635168702272