Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088485.1_202016 -06-16] 1,914 sequences; 35,654,824 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq910 228 2e-57 seq5 214 5e-53 seq87 150 5e-34 seq6 150 5e-34 seq19 140 1e-30 >seq910 Length=1710 Score = 228 bits (252), Expect = 2e-57 Identities = 188/225 (84%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 ||||||||||||||| ||| ||| ||| ||||| ||||| ||||||||||||| | Sbjct 1367 TCATTCCAATTACAAAACCATGAAATGGCCTTGTATTGTTATTTCTTGTCACTACCTCTC 1426 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 1427 TTCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 1486 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGG 182 |||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| |||| Sbjct 1487 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGG 1545 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||| || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 1546 CCAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 1590 >seq5 Length=19578 Score = 214 bits (236), Expect = 5e-53 Identities = 178/214 (83%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 4 CTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 |||| ||||||||||| ||| ||| ||| ||||| || | ||||||||||||| Sbjct 10064 CTCAATCCAATTACAAAACCATGAAATGGCCTTGTATTGTAATATCTTGTCACTACCTCT 10123 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 | || | |||||||||||| ||||||||||||||||||| ||||||||||| |||| Sbjct 10124 CTTCGTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTC 10183 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAG 181 ||||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| || Sbjct 10184 TCAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAA 10242 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215 |||| ||||||| |||||| || ||||||| ||| Sbjct 10243 GCCAATATCCTAACATCGACAGCTGATAGGTCAG 10276 Score = 109 bits (120), Expect = 2e-21 Identities = 93/112 (83%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCTT 451 |||| || | ||||||| ||||||||||| ||||||||||| ||| | || | | | Sbjct 10486 TCAAGTAGATTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTGCATATTAAATATACAT 10545 Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 ||||| ||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 10546 GTACTTGGACTTGCATGGCTTAATCTTTTAGACAAGCATATGACTACTGGCA 10597 >seq87 Length=202169 Score = 150 bits (166), Expect = 5e-34 Identities = 113/130 (87%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 99 TTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158 |||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 1 TTCCTTAGATGTGGTAGCTATTTCTCAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCC 60 Query 159 GTTACCCGTTGATA-CCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAA 217 |||||||| | ||| ||||| ||||||| || |||| |||| |||| ||||||| ||||| Sbjct 61 GTTACCCG-TCATAGCCATGTTAGGCCAATACCCTAACATCAAAAGCTGATAGGTCAGAA 119 Query 218 ATTTGAATGA 227 | | || ||| Sbjct 120 ACTCGATTGA 129 Score = 134 bits (148), Expect = 4e-29 Identities = 129/163 (79%), Gaps = 3/163 (2%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| |||| || | | | |||| || | Sbjct 256 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTGTA-TATAGAAATGTCAAGTAGA 314 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAGA 460 ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| | Sbjct 315 TTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTCA 374 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 375 CTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 417 >seq6 Length=38028 Score = 150 bits (166), Expect = 5e-34 Identities = 113/130 (87%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 99 TTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCC 158 |||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 1 TTCCTTAGATGTGGTAGCTATTTCTCAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCC 60 Query 159 GTTACCCGTTGATA-CCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAA 217 |||||||| | ||| ||||| ||||||| || |||| |||| |||| ||||||| ||||| Sbjct 61 GTTACCCG-TCATAGCCATGTTAGGCCAATACCCTAACATCAAAAGCTGATAGGTCAGAA 119 Query 218 ATTTGAATGA 227 | | || ||| Sbjct 120 ACTCGATTGA 129 Score = 129 bits (142), Expect = 2e-27 Identities = 129/164 (79%), Gaps = 5/164 (3%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA-GTAAGGTACTATCAAATAA 401 |||| ||||||||| || || || ||||||| |||| ||| | | | |||| || Sbjct 256 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTGTAAGTA--GAAATGTCAAGTAG 313 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAG 459 | ||||||| ||||||||||| ||||||||||| |||| | | | ||||||| Sbjct 314 ATTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGTATATACTTTC 373 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || ||||||||||||||||||||||||||||||||||||||||| Sbjct 374 ACTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 417 >seq19 Length=34106 Score = 140 bits (154), Expect = 1e-30 Identities = 105/121 (87%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 108 TGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT 167 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 34106 TGTGGTAGCTATTTCTCAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG- 34048 Query 168 TGATA-CCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226 | ||| ||||| ||||||| || |||| |||| |||| ||||||| |||||| | || || Sbjct 34047 TCATAGCCATGTTAGGCCAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTG 33988 Query 227 A 227 | Sbjct 33987 A 33987 Score = 134 bits (148), Expect = 4e-29 Identities = 130/164 (79%), Gaps = 5/164 (3%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA-GTAAGGTACTATCAAATAA 401 |||| ||||||||| || || || ||||||| |||| ||| | | | |||| || Sbjct 33860 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTGTAAGTA--GAAATGTCAAGTAG 33803 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAG 459 | ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| Sbjct 33802 ATTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTC 33743 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || ||||||||||||||||||||||||||||||||||||||||| Sbjct 33742 ACTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 33699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510371090944