Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1478 174 2e-41 seq835 123 4e-26 seq11 120 5e-25 seq505 86.0 9e-15 seq3484 84.2 3e-14 seq3001 84.2 3e-14 seq38 82.4 1e-13 >seq1478 Length=643 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 175 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 232 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 233 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 292 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 293 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 352 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 353 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 405 >seq835 Length=603 Score = 123 bits (136), Expect = 4e-26 Identities = 191/282 (68%), Gaps = 53/282 (19%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 59 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 116 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||| ||| | | |||||| Sbjct 117 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTACTGATAAAGAT 176 Query 119 TACCCGGACCTGTCGGCCAAGG--------------TGATAG------------------ 146 |||| |||| ||||| ||| ||| || Sbjct 177 TACCTACACCTTTCGGCGGAGGAAAAGTATACTATTTGAGAGAGTATAAATACTCAAACA 236 Query 147 -----------------ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACA 189 ||||||| | | ||||||||||| ||||||| ||| || || Sbjct 237 AAAGTATATTTTTAGTAACTCGTTATACATATCAGTGTAGCACGCGTGCAGCCTAGTTCA 296 Query 190 TCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 ||||||| ||||||||||||||| |||||| |||||||| || Sbjct 297 TCTAAGGACATCACAGACCTGTTGTTGCCTTAAACTTCCTTG 338 >seq11 Length=1880 Score = 120 bits (132), Expect = 5e-25 Identities = 111/137 (81%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 1690 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 1747 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||| ||| | | |||||| Sbjct 1748 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTACTGATAAAGAT 1807 Query 119 TACCCGGACCTGTCGGC 135 |||| |||| ||||| Sbjct 1808 TACCTACACCTTTCGGC 1824 >seq505 Length=1536 Score = 86.0 bits (94), Expect = 9e-15 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 221 ||||||||| ||||||| ||| || ||||||||| ||||||||||||||| |||||| | Sbjct 1 CAGTGTAGCACGCGTGCAGCCTAGTTCATCTAAGGACATCACAGACCTGTTGTTGCCTTA 60 Query 222 AACTTCCGTG 231 ||||||| || Sbjct 61 AACTTCCTTG 70 >seq3484 Length=525829 Score = 84.2 bits (92), Expect = 3e-14 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | | |||||| || |||||||||| | ||| Sbjct 525745 GTACAAAGGGCAGGGACGTAGTCAGCACAATC-TGATGAATCATGCTTACTAGGCA-TTC 525802 Query 61 CTCGTTGAAGACCAACAATTGCAAT 85 |||||| |||| || ||||||||| Sbjct 525803 CTCGTTCAAGATTAATAATTGCAAT 525827 >seq3001 Length=4816 Score = 84.2 bits (92), Expect = 3e-14 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | | |||||| || |||||||||| | ||| Sbjct 4732 GTACAAAGGGCAGGGACGTAGTCAGCACAATC-TGATGAATCATGCTTACTAGGCA-TTC 4789 Query 61 CTCGTTGAAGACCAACAATTGCAAT 85 |||||| |||| || ||||||||| Sbjct 4790 CTCGTTCAAGATTAATAATTGCAAT 4814 >seq38 Length=135006 Score = 82.4 bits (90), Expect = 1e-13 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||| | | |||| |||||| ||||||| ||| || | ||||| || ||| ||||| Sbjct 10139 ACTCGTTATACATATCATTGTAGCACGCGTGCAGCCTAGTATATCTAGGGACATTACAGA 10198 Query 207 CCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||| |||||||| || Sbjct 10199 CCTGTTGTTGCCTTAAACTTCCTTG 10223 Score = 77.0 bits (84), Expect = 5e-12 Identities = 81/104 (78%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | | |||||| || |||||||||| | ||| Sbjct 9527 GTACAAAGGGCAGGGACGTAGTCAGCACAATC-TGATGAATCATGCTTACTAGGCA-TTC 9584 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGAT 104 |||||| || | | |||| || || |||||| || ||||| Sbjct 9585 CTCGTTCAAAATTCATAATTACAGAAATTTATCCCAATTACGAT 9628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751974619060