Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq739 149 3e-33 seq38 104 1e-19 seq3001 100 1e-18 seq11 89.7 2e-15 seq3484 80.6 1e-12 >seq739 Length=1666 Score = 149 bits (164), Expect = 3e-33 Identities = 105/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 1271 TGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 1330 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 1331 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 1390 >seq38 Length=135006 Score = 104 bits (114), Expect = 1e-19 Identities = 120/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| |||| ||| | | || ||||| |||||||||| Sbjct 4381 GAGTCGTGTTCTTTGAGATTGGAGCACTAATATGTGTGATACATTTCACATAAAGCTAAA 4322 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 ||| | |||||||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 4321 TATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGGACTCAGG 4262 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || |||| ||||| | || |||||| ||| | | |||| Sbjct 4261 AATGAGAATTAAATATGACCTGAAATCGTTAAGATGGAA 4223 >seq3001 Length=4816 Score = 100 bits (110), Expect = 1e-18 Identities = 115/151 (76%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGG-GAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| |||| | | | | || ||||| |||||||||| Sbjct 3179 GAGTCGTGTTCTTTGAGATTGGAGCACTAATTTGTGTGATACATTTCACATAAAGCTAAA 3120 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 ||| | |||||||||||| ||||||| |||| ||||||||||| |||||| || Sbjct 3119 TATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGCACTCAGG 3060 Query 158 AAAGAG-AGTTAAAAAGCACGTGAAATTGTT 187 || ||| | ||||| || || |||||| ||| Sbjct 3059 AATGAGCAATTAAATAGTACCTGAAATCGTT 3029 >seq11 Length=1880 Score = 89.7 bits (98), Expect = 2e-15 Identities = 106/140 (76%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGG-GAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || ||| |||| | | | | || ||||| |||||||||| Sbjct 140 GAGTCGTGTTCTTTGAGATTGGAGCACTAATTTGTGTGATACATTTCACATAAAGCTAAA 81 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 ||| | |||||||||||| ||||||| |||| ||||||||||| |||||| || Sbjct 80 TATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGCACTCAGG 21 Query 158 AAAGAG-AGTTAAAAAGCAC 176 || ||| | ||||| || || Sbjct 20 AATGAGCAATTAAATAGTAC 1 >seq3484 Length=525829 Score = 80.6 bits (88), Expect = 1e-12 Identities = 80/101 (79%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 89 TAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA- 147 ||||||||||||| | ||||||||||| | ||||||| |||| ||||||||||| Sbjct 523161 TAAAGCTAAATATGTGTAGGAGACCGATAGAGAACAAGTACCGTGAGGGAAAGATGAAAT 523102 Query 148 AGCACTTTGGAAAGAG-AGTTAAAAAGCACGTGAAATTGTT 187 || ||| |||| ||| | |||||||| || |||||| ||| Sbjct 523101 AGAACTCAGGAATGAGCAATTAAAAAGTACCTGAAATCGTT 523061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079925268200