Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1478 197 3e-48 seq835 116 7e-24 seq11 116 7e-24 seq505 91.5 3e-16 seq3484 89.7 1e-15 seq3001 89.7 1e-15 seq38 78.8 2e-12 >seq1478 Length=643 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 431 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 374 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 373 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 314 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 313 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 254 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 253 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 194 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 193 AAGTCCCTGCCCTTTGTA 176 >seq835 Length=603 Score = 116 bits (128), Expect = 7e-24 Identities = 107/134 (80%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAAT 254 |||| ||||| | ||||||||| | | | | ||||| |||||||||| |||||||| Sbjct 193 GCCGAAAGGTGTAGGTAATCTTTATCAGTACATATCGTGATGGGGATAGATTATTGCAAT 134 Query 255 TATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGT 314 |||| |||| ||||||||||||||||||||| | ||||||| | | ||| ||||| Sbjct 133 TATTAATCTTGAACGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGT 74 Query 315 CCCTGCCCTTTGTA 328 |||||||||||||| Sbjct 73 CCCTGCCCTTTGTA 60 Score = 89.7 bits (98), Expect = 1e-15 Identities = 90/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | | | | | |||||||| |||||| ||||||||||| Sbjct 368 GCTTCTTAGAGGAACGATGTGTGTATAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 309 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 |||| ||||||||| || ||| ||||||| |||||||||| | |||||||| Sbjct 308 GATGTCCTTAGATGAACTAGGCTGCACGCGTGCTACACTGATATGTATAACGAGTT 253 >seq11 Length=1880 Score = 116 bits (128), Expect = 7e-24 Identities = 107/134 (80%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAAT 254 |||| ||||| | ||||||||| | | | | ||||| |||||||||| |||||||| Sbjct 1824 GCCGAAAGGTGTAGGTAATCTTTATCAGTACATATCGTGATGGGGATAGATTATTGCAAT 1765 Query 255 TATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGT 314 |||| |||| ||||||||||||||||||||| | ||||||| | | ||| ||||| Sbjct 1764 TATTAATCTTGAACGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGT 1705 Query 315 CCCTGCCCTTTGTA 328 |||||||||||||| Sbjct 1704 CCCTGCCCTTTGTA 1691 >seq505 Length=1536 Score = 91.5 bits (100), Expect = 3e-16 Identities = 81/100 (81%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 100 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 41 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 |||| ||||||||| || ||| ||||||| ||||||||| Sbjct 40 GATGTCCTTAGATGAACTAGGCTGCACGCGTGCTACACTG 1 >seq3484 Length=525829 Score = 89.7 bits (98), Expect = 1e-15 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 |||||||||||| |||| ||||||||||||||||||||| | ||||||| | | | Sbjct 525827 ATTGCAATTATTAATCTTGAACGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCT 525768 Query 307 GATTACGTCCCTGCCCTTTGTA 328 || ||||||||||||||||||| Sbjct 525767 GACTACGTCCCTGCCCTTTGTA 525746 >seq3001 Length=4816 Score = 89.7 bits (98), Expect = 1e-15 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 |||||||||||| |||| ||||||||||||||||||||| | ||||||| | | | Sbjct 4814 ATTGCAATTATTAATCTTGAACGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCT 4755 Query 307 GATTACGTCCCTGCCCTTTGTA 328 || ||||||||||||||||||| Sbjct 4754 GACTACGTCCCTGCCCTTTGTA 4733 >seq38 Length=135006 Score = 78.8 bits (86), Expect = 2e-12 Identities = 94/128 (73%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 201 AAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGC 260 || || | |||||||| || | | | |||| | |||||| | || |||||| Sbjct 9655 AAAGTGTAGGTAATCTAGTCAGAACATATCGTAATTGGGATAAATTTCTGTAATTATGAA 9596 Query 261 TCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGC 320 | || ||||||||||||||||||||| | ||||||| | | ||| ||||||||||| Sbjct 9595 TTTTGAACGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTGC 9536 Query 321 CCTTTGTA 328 |||||||| Sbjct 9535 CCTTTGTA 9528 Score = 78.8 bits (86), Expect = 2e-12 Identities = 80/102 (78%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGG--CTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||||||| || || | || || | | |||||||| |||||| |||||||||| Sbjct 10253 GCTTCTTAGAGGTACGATGTGTGCTTAACACAA-GGAAGTTTAAGGCAACAACAGGTCTG 10195 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 | ||| || ||||| | || ||| ||||||| |||||| ||| Sbjct 10194 TAATGTCCCTAGATATACTAGGCTGCACGCGTGCTACAATGA 10153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947166999552