Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq505 228 2e-57 seq38 214 5e-53 seq177 143 8e-32 seq178 134 4e-29 seq116 134 4e-29 seq13 129 2e-27 >seq505 Length=1536 Score = 228 bits (252), Expect = 2e-57 Identities = 188/225 (84%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 5 TCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 ||||||||||||||| ||| ||| ||| ||||| ||||| ||||||||||||| | Sbjct 1193 TCATTCCAATTACAAAACCATGAAATGGCCTTGTATTGTTATTTCTTGTCACTACCTCTC 1252 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 1253 TTCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 1312 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGG 182 |||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| |||| Sbjct 1313 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGG 1371 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||| || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 1372 CCAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 1416 >seq38 Length=135006 Score = 214 bits (236), Expect = 5e-53 Identities = 178/214 (83%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 4 CTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 |||| ||||||||||| ||| ||| ||| ||||| || | ||||||||||||| Sbjct 11374 CTCAATCCAATTACAAAACCATGAAATGGCCTTGTATTGTAATATCTTGTCACTACCTCT 11433 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 | || | |||||||||||| ||||||||||||||||||| ||||||||||| |||| Sbjct 11434 CTTCGTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTC 11493 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAG 181 ||||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| || Sbjct 11494 TCAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAA 11552 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215 |||| ||||||| |||||| || ||||||| ||| Sbjct 11553 GCCAATATCCTAACATCGACAGCTGATAGGTCAG 11586 Score = 109 bits (120), Expect = 2e-21 Identities = 93/112 (83%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 394 TCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGAT-TGCTT 451 |||| || | ||||||| ||||||||||| ||||||||||| ||| | || | | | Sbjct 11796 TCAAGTAGATTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTGCATATTAAATATACAT 11855 Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 ||||| ||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 11856 GTACTTGGACTTGCATGGCTTAATCTTTTAGACAAGCATATGACTACTGGCA 11907 >seq177 Length=178137 Score = 143 bits (158), Expect = 8e-32 Identities = 100/111 (90%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 88 CGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAAC 147 ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 178028 CGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCTCAGGCTCCCTCTCCGGAATCGAAC 178087 Query 148 CCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGGCCACTATCCTACCAT 197 |||||||||||||||||| | ||| ||||| ||||||| || |||| ||| Sbjct 178088 TCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGGCCAATACCCTAACAT 178137 >seq178 Length=93219 Score = 134 bits (148), Expect = 4e-29 Identities = 130/164 (79%), Gaps = 5/164 (3%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA-GTAAGGTACTATCAAATAA 401 |||| ||||||||| || || || ||||||| |||| ||| | | | |||| || Sbjct 157 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTGTAAGTA--GAAATGTCAAGTAG 214 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAG 459 | ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| Sbjct 215 ATTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTC 274 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || ||||||||||||||||||||||||||||||||||||||||| Sbjct 275 ACTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 318 >seq116 Length=45669 Score = 134 bits (148), Expect = 4e-29 Identities = 129/163 (79%), Gaps = 3/163 (2%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| |||| || | | | |||| || | Sbjct 242 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTGTA-TATAGAAATGTCAAGTAGA 300 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAGA 460 ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| | Sbjct 301 TTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTCA 360 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 403 Score = 131 bits (144), Expect = 5e-28 Identities = 100/116 (86%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 113 TAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA 172 |||| ||||||||||||||||||||||||||||| |||||||||||||||||| | ||| Sbjct 1 TAGCTATTTCTCAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATA 59 Query 173 -CCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||||| ||||||| || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 60 GCCATGTTAGGCCAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 115 >seq13 Length=73579 Score = 129 bits (142), Expect = 2e-27 Identities = 96/110 (87%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATG 177 ||||||||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| Sbjct 6 TTTCTCAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATG 64 Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||||||| || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 65 TTAGGCCAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 114 Score = 129 bits (142), Expect = 2e-27 Identities = 129/164 (79%), Gaps = 5/164 (3%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA-GTAAGGTACTATCAAATAA 401 |||| ||||||||| || || || ||||||| |||| ||| | | | |||| || Sbjct 241 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTGTAAGTA--GAAATGTCAAGTAG 298 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAG 459 | ||||||| ||||||||||| ||||||||||| |||| | | | ||||||| Sbjct 299 ATTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGTATATACTTTC 358 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || ||||||||||||||||||||||||||||||||||||||||| Sbjct 359 ACTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510347377664