Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20ovale_20wallikeri_20[genbank_20GCA_5F900088545.1_202016 -06-16] 3,484 sequences; 36,406,953 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq177 111 1e-19 >seq177 Length=178137 Score = 111 bits (122), Expect = 1e-19 Identities = 403/626 (64%), Gaps = 6/626 (1%) Strand=Plus/Minus Query 66008 GCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCG 66067 |||| |||||| | ||| || ||||| | || || || | ||||| || | ||||| Sbjct 42899 GCAATAGATGCTAAGTTACAAACAGCAACTTCATCTGGTGATGTATATTCTATTATTTCA 42840 Query 66068 GTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCAT 66127 ||| |||||||| || || || || ||||| | ||||||| || ||| ||| Sbjct 42839 CAGCATAGATTACTACATTTAATTGTACCTAAATTTTTTTGATTAGATTTAGCATTACAT 42780 Query 66128 GCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGC 66187 | ||| ||||||| |||||| || || || |||| || | | || || | Sbjct 42779 GAATCTTTGTACAACATGTATGGTACACCTGTTTCAATCTGACTTTGTAAAATAGCAAAC 42720 Query 66188 CAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGT--TCGTAATGTTCGT 66245 || | | | | || || || | |||| ||| | | || || | ||| | Sbjct 42719 CATAAATCTTGAGCTAATACAGTTTTTTTT--CCTAAATTTTCTTCTTCATACTTTTCAT 42662 Query 66246 AGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACA 66305 | | | ||| || |||||||||| ||| || || |||||| | | |||||||| Sbjct 42661 ATAATTTTTCAAATTCTTCACCCCATGTTTCACTCAAACCTGGACATTCATTTGGACACA 42602 Query 66306 TCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGG 66365 | | | ||||| || | | || | |||||||| ||| || | ||| | | Sbjct 42601 TTAAAGTCCAATTTTTATTTTCCTTAACTCTTTTCATAAATAAATCTGGAACCCAAACAG 42542 Query 66366 CGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGA 66425 | || || | ||| | |||| | || || | || |||||||| | ||| || || | Sbjct 42541 CATAAAATAAATCTCTAGCTCTTAATTCTTCTTTACCATGATTTTTTCTCAAATCTAGAA 42482 Query 66426 ACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGC 66485 | ||||| ||||| | |||||||||||| | || | || || || || | | ||| | Sbjct 42481 ATTCAAATATGTCTGAATGCCATGGTTCAATATATACTGCAAATGATCCTTTTCTTTTTC 42422 Query 66486 CGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCC 66545 | |||||||| || || || | ||| || ||| || || | ||||| ||||| | | Sbjct 42421 CTCCACCTTGATCTACATATCTAGCTGTATCGTTAAAAACTCTTAACATTGGTACTAATC 42362 Query 66546 CGTTAGATTTGCCATTGGTGCCGTCGAT-GGGGGATCCTCGTGCCCGTATATCGTGAACA 66604 |||| || | ||||| || || || | || || || | |||||||| || || Sbjct 42361 CGTTTGAAATACCATTAGTTCCTCTTATATATGAATTCT-GTCCACGTATATCTTGTACT 42303 Query 66605 TTCAGACCAATACCACCGGCCGTCTT 66630 | |||||||||||| || || || Sbjct 42302 GCTACACCAATACCACCTGCAGTTTT 42277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397551118765760