Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq361 111 3e-22 seq369 98.7 2e-18 seq367 98.7 2e-18 seq357 98.7 2e-18 >seq361 Length=1293923 Score = 111 bits (122), Expect = 3e-22 Identities = 184/265 (69%), Gaps = 22/265 (8%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC---------------CTTTGCTCGAA 119 ||||||||| |||||||||||||||||||| | || || | ||| Sbjct 1234109 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAAACAGTTAAAGCATTTTACTGTGTTTGAA 1234168 Query 120 TACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC 179 ||| ||||||||||||| | ||| | || || | | ||||||| ||| | | Sbjct 1234169 TACTATAGCATGGAATAACAAAATTGAACAGGCTGAAATTTTTTGTTCTTTTTTCTTATT 1234228 Query 180 ---GCC--GTAATGATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGT 233 || || | |||||||||| ||| | |||| | ||||||| |||||||||| Sbjct 1234229 TTGGCTTAGTTACGATTAATAGGAGTAGCTTGGGGACATTCGTATTCAGATGTCAGAGGT 1234288 Query 234 GAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA 293 ||||||||| ||||| || |||| ||| ||||||||||| || | | || || || Sbjct 1234289 GAAATTCTTAGATTTTCTGGAGACGAACAACTGCGAAAGCATTTGTCTAAAATACTTCCA 1234348 Query 294 TTAATCAGTGAACGAAAGTTAGGGG 318 ||||||| |||||||||||| ||| Sbjct 1234349 TTAATCA-AGAACGAAAGTTAAGGG 1234372 >seq369 Length=2804353 Score = 98.7 bits (108), Expect = 2e-18 Identities = 103/133 (77%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 188 GATTAATAGGGATAG--TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||||| ||| | ||||| | ||||||| |||||||||||||||||| || Sbjct 2742004 GATTAATAGGAGTAGCTTTGGGGGCATTCGTATTCAGATGTCAGAGGTGAAATTCTAAGA 2742063 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 ||| || |||| |||||||||||||| || || | | ||| ||||||||| ||| Sbjct 2742064 TTTTCTGGAGACGGACTACTGCGAAAGCATTTGCCTAATCTATTTCCATTAATCA-AGAA 2742122 Query 306 CGAAAGTTAGGGG 318 ||||||||| ||| Sbjct 2742123 CGAAAGTTAAGGG 2742135 Score = 98.7 bits (108), Expect = 2e-18 Identities = 103/133 (77%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 188 GATTAATAGGGATAG--TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||||| ||| | ||||| | ||||||| |||||||||||||||||| || Sbjct 2742276 GATTAATAGGAGTAGCTTTGGGGGCATTCGTATTCAGATGTCAGAGGTGAAATTCTAAGA 2742335 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 ||| || |||| |||||||||||||| || || | | ||| ||||||||| ||| Sbjct 2742336 TTTTCTGGAGACGGACTACTGCGAAAGCATTTGCCTAATCTATTTCCATTAATCA-AGAA 2742394 Query 306 CGAAAGTTAGGGG 318 ||||||||| ||| Sbjct 2742395 CGAAAGTTAAGGG 2742407 >seq367 Length=1919181 Score = 98.7 bits (108), Expect = 2e-18 Identities = 103/133 (77%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 188 GATTAATAGGGATAG--TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||||| ||| | ||||| | ||||||| |||||||||||||||||| || Sbjct 1845089 GATTAATAGGAGTAGCTTTGGGGGCATTCGTATTCAGATGTCAGAGGTGAAATTCTAAGA 1845148 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 ||| || |||| |||||||||||||| || || | | ||| ||||||||| ||| Sbjct 1845149 TTTTCTGGAGACGGACTACTGCGAAAGCATTTGCCTAATCTATTTCCATTAATCA-AGAA 1845207 Query 306 CGAAAGTTAGGGG 318 ||||||||| ||| Sbjct 1845208 CGAAAGTTAAGGG 1845220 Score = 98.7 bits (108), Expect = 2e-18 Identities = 103/133 (77%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 188 GATTAATAGGGATAG--TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||||| ||| | ||||| | ||||||| |||||||||||||||||| || Sbjct 1845361 GATTAATAGGAGTAGCTTTGGGGGCATTCGTATTCAGATGTCAGAGGTGAAATTCTAAGA 1845420 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 ||| || |||| |||||||||||||| || || | | ||| ||||||||| ||| Sbjct 1845421 TTTTCTGGAGACGGACTACTGCGAAAGCATTTGCCTAATCTATTTCCATTAATCA-AGAA 1845479 Query 306 CGAAAGTTAGGGG 318 ||||||||| ||| Sbjct 1845480 CGAAAGTTAAGGG 1845492 >seq357 Length=496884 Score = 98.7 bits (108), Expect = 2e-18 Identities = 103/133 (77%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 188 GATTAATAGGGATAG--TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||||| ||| | ||||| | ||||||| |||||||||||||||||| || Sbjct 376922 GATTAATAGGAGTAGCTTTGGGGGCATTCGTATTCAGATGTCAGAGGTGAAATTCTAAGA 376981 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 ||| || |||| |||||||||||||| || || | | ||| ||||||||| ||| Sbjct 376982 TTTTCTGGAGACGGACTACTGCGAAAGCATTTGCCTAATCTATTTCCATTAATCA-AGAA 377040 Query 306 CGAAAGTTAGGGG 318 ||||||||| ||| Sbjct 377041 CGAAAGTTAAGGG 377053 Score = 98.7 bits (108), Expect = 2e-18 Identities = 103/133 (77%), Gaps = 3/133 (2%) Strand=Plus/Plus Query 188 GATTAATAGGGATAG--TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||||| ||| | ||||| | ||||||| |||||||||||||||||| || Sbjct 377194 GATTAATAGGAGTAGCTTTGGGGGCATTCGTATTCAGATGTCAGAGGTGAAATTCTAAGA 377253 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 ||| || |||| |||||||||||||| || || | | ||| ||||||||| ||| Sbjct 377254 TTTTCTGGAGACGGACTACTGCGAAAGCATTTGCCTAATCTATTTCCATTAATCA-AGAA 377312 Query 306 CGAAAGTTAGGGG 318 ||||||||| ||| Sbjct 377313 CGAAAGTTAAGGG 377325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915196595456