Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq364 98.7 4e-18 seq361 95.1 5e-17 seq357 93.3 2e-16 seq369 80.6 1e-12 seq367 80.6 1e-12 seq320 77.0 1e-11 >seq364 Length=1300438 Score = 98.7 bits (108), Expect = 4e-18 Identities = 120/160 (75%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGG-GAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| || || | | |||| ||| | | || ||||| |||||||||| Sbjct 1211502 GAGTCGTGTTCTTTGAGACTGGAACACTAATTGGTGTGATACATTTCACATAAAGCTAAA 1211561 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 |||| | ||| |||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 1211562 TATTTGTAAGAAACCGATAGTAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 1211621 Query 158 AAAGAG-AGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || ||| | ||||| || || |||||| ||| | | |||| Sbjct 1211622 AATGAGCAATTAAATAGTACCTGAAATCGTTAAGATGGAA 1211661 Score = 89.7 bits (98), Expect = 2e-15 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||||||||||| |||| |||||||| || ||||||| | ||| || ||| Sbjct 1212557 TTGAGTAAGAGCATACTTGTTAGGACCCGAGAGGCTTTGAACTAAACGTGATGAGATTGA 1212616 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || ||||| ||| |||| |||||| ||| | | ||| ||||||||||| || | | Sbjct 1212617 AGTCAGAGTAAAATCTGATGGAGGATCGAGTTGATACTGACGTGCAAATCGTTCATTTCA 1212676 Query 667 TTTGGGTATAGGGGCGA 683 ||| || ||||||||| Sbjct 1212677 ATTGCGTTTAGGGGCGA 1212693 >seq361 Length=1293923 Score = 95.1 bits (104), Expect = 5e-17 Identities = 120/161 (75%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAA 97 ||||||| ||| |||| || || ||| | || | | | | || ||||| ||||||||| Sbjct 1236859 CGAGTCGTGTTCTTTGAGATTGGAGCACAAATACGTGTGATACATTTCACATAAAGCTAA 1236918 Query 98 ATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTG 156 |||| | |||||||||||| ||||||| |||| ||||||||||| || ||| | Sbjct 1236919 ATATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAG 1236978 Query 157 GAAAGAG-AGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 ||| ||| | ||||| || || |||||| ||| | | |||| Sbjct 1236979 GAATGAGCAATTAAATAGTACCTGAAATCGTTAAGATGGAA 1237019 >seq357 Length=496884 Score = 93.3 bits (102), Expect = 2e-16 Identities = 119/160 (74%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGG-GAGGTAAATTTCTTCTAAAGCTAAA 98 |||| | ||| |||| || || ||| | || | | | | || ||||| |||||||||| Sbjct 380222 GAGTAGTGTTCTTTGAGATTGGAGCACAAATTAGTGTGATACATTTCACATAAAGCTAAA 380281 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 ||| | ||||||||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 380282 TATGTACAGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 380341 Query 158 AAAGAG-AGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || ||| | ||||| || || |||||| ||| | | |||| Sbjct 380342 AATGAGCAATTAAATAGTACCTGAAATCGTTAAGATGGAA 380381 >seq369 Length=2804353 Score = 80.6 bits (88), Expect = 1e-12 Identities = 101/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 545 ATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGT 604 ||||||||| ||| | | |||| |||||||| || ||||||| || ||| || | Sbjct 2745093 ATTTGAGTATGAGTACATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGATGAGATT 2745152 Query 605 GAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCA 664 |||| |||| |||| |||| |||||| ||| | | ||| ||||||||||| || | | Sbjct 2745153 GAAGTCAGACGAAAGTCTGATGGAGGATCGAGTTGATACTGACGTGCAAATCGTTCATTA 2745212 Query 665 AATTTGGGTATAGGGGCGA 683 | | || ||||||||| Sbjct 2745213 CAATCACGTTTAGGGGCGA 2745231 Score = 78.8 bits (86), Expect = 4e-12 Identities = 86/112 (77%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 78 TAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCG 137 || ||||| ||||||||||||| |||||||||||| ||||||| |||| | Sbjct 2744300 TACATTTCACATAAAGCTAAATATATATAGGAGACCGATAGCAAACAAGTACCGTGAGGG 2744359 Query 138 AAAGATGAAA-AGCACTTTGGAAAGAG-AGTTAAAAAGCACGTGAAATTGTT 187 |||||||||| || ||| |||| ||| ||||||| || || |||||| ||| Sbjct 2744360 AAAGATGAAATAGTACTCAGGAATGAGCAGTTAAATAGTACCTGAAATCGTT 2744411 >seq367 Length=1919181 Score = 80.6 bits (88), Expect = 1e-12 Identities = 101/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 545 ATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGT 604 ||||||||| ||| | | |||| |||||||| || ||||||| || ||| || | Sbjct 1848178 ATTTGAGTATGAGTACATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGATGAGATT 1848237 Query 605 GAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCA 664 |||| |||| |||| |||| |||||| ||| | | ||| ||||||||||| || | | Sbjct 1848238 GAAGTCAGACGAAAGTCTGATGGAGGATCGAGTTGATACTGACGTGCAAATCGTTCATTA 1848297 Query 665 AATTTGGGTATAGGGGCGA 683 | | || ||||||||| Sbjct 1848298 CAATCACGTTTAGGGGCGA 1848316 Score = 78.8 bits (86), Expect = 4e-12 Identities = 86/112 (77%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 78 TAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCG 137 || ||||| ||||||||||||| |||||||||||| ||||||| |||| | Sbjct 1847385 TACATTTCACATAAAGCTAAATATATATAGGAGACCGATAGCAAACAAGTACCGTGAGGG 1847444 Query 138 AAAGATGAAA-AGCACTTTGGAAAGAG-AGTTAAAAAGCACGTGAAATTGTT 187 |||||||||| || ||| |||| ||| ||||||| || || |||||| ||| Sbjct 1847445 AAAGATGAAATAGTACTCAGGAATGAGCAGTTAAATAGTACCTGAAATCGTT 1847496 >seq320 Length=1300 Score = 77.0 bits (84), Expect = 1e-11 Identities = 94/126 (75%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAA 97 ||||||| ||| |||| || || ||| | || | | | | || ||||| ||||||||| Sbjct 126 CGAGTCGTGTTCTTTGAGATTGGAGCACAAATACGTGTGATACATTTCACATAAAGCTAA 67 Query 98 ATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTG 156 |||| | |||||||||||| ||||||| |||| ||||||||||| || ||| | Sbjct 66 ATATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAG 7 Query 157 GAAAGA 162 ||| || Sbjct 6 GAATGA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079992020600