Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq369 291 1e-76 seq367 291 1e-76 seq364 232 1e-58 seq357 87.8 3e-15 >seq369 Length=2804353 Score = 291 bits (322), Expect = 1e-76 Identities = 188/206 (91%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2747675 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 2747616 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 2747615 TTAGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 2747556 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||| Sbjct 2747555 CATCGAAGGATCAAAAAGCTACGTCGCTAGGAGCGCTTGGCAGCCACAAGCCAGTTATCC 2747496 Query 211 CTGTGGTAACTTTTCTGGCACCTCTA 236 ||||||||||||||| | |||||||| Sbjct 2747495 CTGTGGTAACTTTTCAGACACCTCTA 2747470 >seq367 Length=1919181 Score = 291 bits (322), Expect = 1e-76 Identities = 188/206 (91%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1850760 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 1850701 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| || |||||| || ||||||||||||||||| Sbjct 1850700 TTAGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGA 1850641 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||| Sbjct 1850640 CATCGAAGGATCAAAAAGCTACGTCGCTAGGAGCGCTTGGCAGCCACAAGCCAGTTATCC 1850581 Query 211 CTGTGGTAACTTTTCTGGCACCTCTA 236 ||||||||||||||| | |||||||| Sbjct 1850580 CTGTGGTAACTTTTCAGACACCTCTA 1850555 >seq364 Length=1300438 Score = 232 bits (256), Expect = 1e-58 Identities = 175/206 (85%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1215290 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 1215231 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||| || ||| || |||||| || |||||||||||||||| Sbjct 1215230 TTAGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGT 1215171 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||| |||||||| |||| |||| | |||| || ||||||| | |||||||| Sbjct 1215170 AATCGAAAATACAAAAAGCTACGTTGCTAATATCGCTAAGCAGCCACAAACAAGTTATCC 1215111 Query 211 CTGTGGTAACTTTTCTGGCACCTCTA 236 ||||||||||||||| | ||||||| Sbjct 1215110 CTGTGGTAACTTTTCAGATACCTCTA 1215085 Score = 91.5 bits (100), Expect = 3e-16 Identities = 98/129 (76%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 75 CAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTA 134 |||||| |||||||| ||| || |||||||||| || ||| || |||| |||| | Sbjct 24973 CAGCTCTCGTTCCCTTTTAACGGTTGAACAATCCGACACTTTGAGATTTCTTCTTCTCAA 25032 Query 135 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAA---CGCTTGGC 191 |||||||||||||| |||| |||||||||| |||| |||| || |||| ||| Sbjct 25033 TGATAGGAAGAGCCAACATTCTCATATCAAAAAGCTACGTTGCTAAAAATATCGCTCGGC 25092 Query 192 TGCCACAAG 200 |||||||| Sbjct 25093 AGCCACAAG 25101 >seq357 Length=496884 Score = 87.8 bits (96), Expect = 3e-15 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTA 236 |||| |||||||| ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 382981 ATGAGCGCTTGGCAGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCAGACACCTCTA 382924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854396821632