Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq361 114 2e-23 >seq361 Length=1293923 Score = 114 bits (126), Expect = 2e-23 Identities = 205/308 (67%), Gaps = 50/308 (16%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || | | || | | | |||||||| |||||| ||||||||||| Sbjct 1235079 GCTTCTTAGAGGAACATTGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 1235138 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT---- 185 |||| ||||||||| || ||| ||||||| |||||||||| | | |||||||| Sbjct 1235139 GATGTCCTTAGATGAACTAGGCTGCACGCGTGCTACACTGATATATATAACGAGTTATTA 1235198 Query 186 --------CAT-----------------------------CA-------CCTTGGCCGGA 201 ||| || ||| |||| | Sbjct 1235199 AAAATATGCATTTATTTGTATCTTTGATGCTTATATTTTGCATACTTTTCCTCCGCCGAA 1235258 Query 202 AGGTCTGGGTAATCTTGTTAAAC-TCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGC 260 ||| | ||||||||| | || | | ||||| |||||||||| |||||||||||| Sbjct 1235259 AGGCGTAGGTAATCTTTATCAATATATATCGTGATGGGGATAGATTATTGCAATTATTAA 1235318 Query 261 TCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGC 320 |||| ||||||||||||||||||||| | |||| || | | ||| ||||||||||| Sbjct 1235319 TCTTGAACGAGGAATGCCTAGTAAGCATGATTCATTAGATTGTGCTGACTACGTCCCTGC 1235378 Query 321 CCTTTGTA 328 |||||||| Sbjct 1235379 CCTTTGTA 1235386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947196476416