Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq369 437 3e-120 seq367 437 3e-120 seq357 437 3e-120 seq364 329 1e-87 seq361 176 1e-41 seq273 113 1e-22 >seq369 Length=2804353 Score = 437 bits (484), Expect = 3e-120 Identities = 316/367 (86%), Gaps = 15/367 (4%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG----------- 236 ||||||||| ||| ||| |||||||||||||||| || |||| Sbjct 2747146 TAAGTAAAACAACTTTAAAAGTAGTGGTATTTCACTGTCGTAAAAACATATTTCAGTTTC 2747087 Query 237 --CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 2747086 TACTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTC 2747027 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2747026 AACAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 2746967 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2746966 AGATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 2746907 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2746906 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTT 2746847 Query 475 GGTTGAA--TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 ||||| |||| ||| || ||||||| ||||||||||||||||||||||| || || Sbjct 2746846 AATTGAATTTTTCATCAACTTAACATTCAAAGCACTGGGCAGAAATCACATTGTGTTAAT 2746787 Query 533 ATCACTT 539 | || || Sbjct 2746786 ACCAGTT 2746780 Score = 107 bits (118), Expect = 6e-21 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| |||||||| Sbjct 2747359 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTAAT 2747300 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 2747299 ATTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 2747253 >seq367 Length=1919181 Score = 437 bits (484), Expect = 3e-120 Identities = 316/367 (86%), Gaps = 15/367 (4%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG----------- 236 ||||||||| ||| ||| |||||||||||||||| || |||| Sbjct 1850231 TAAGTAAAACAACTTTAAAAGTAGTGGTATTTCACTGTCGTAAAAACATATTTCAGTTTC 1850172 Query 237 --CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 1850171 TACTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTC 1850112 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1850111 AACAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 1850052 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1850051 AGATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 1849992 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1849991 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTT 1849932 Query 475 GGTTGAA--TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 ||||| |||| ||| || ||||||| ||||||||||||||||||||||| || || Sbjct 1849931 AATTGAATTTTTCATCAACTTAACATTCAAAGCACTGGGCAGAAATCACATTGTGTTAAT 1849872 Query 533 ATCACTT 539 | || || Sbjct 1849871 ACCAGTT 1849865 Score = 107 bits (118), Expect = 6e-21 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| |||||||| Sbjct 1850444 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTAAT 1850385 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 1850384 ATTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 1850338 >seq357 Length=496884 Score = 437 bits (484), Expect = 3e-120 Identities = 280/304 (92%), Gaps = 1/304 (0%) Strand=Plus/Minus Query 237 CTCCCACTTAT-TCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||||||||| ||||||||| | ||||| ||| |||||||| ||||||||| ||||||| Sbjct 382488 CTCCCACTTATATCTACACCTTTTAAGTCGTTTTACAAAGTCAGACTAGAGTAAAGCTCA 382429 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 382428 ACAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 382369 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 382368 GATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 382309 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 382308 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTTA 382249 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 || |||||| ||| ||||||||||| ||||||||||||||||||||||| || || | | Sbjct 382248 ATTAAATTTCATCAATTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGTTAATACC 382189 Query 536 ACTT 539 | || Sbjct 382188 AGTT 382185 Score = 107 bits (118), Expect = 6e-21 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||| ||||||||||| |||| ||| ||||| ||||||||| Sbjct 382810 CTTTTAGTCTACATGAGGTTTCTGTTCTCATTGAGCTTGTCTTTGGACATCTGCGTTATT 382751 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||||||||||| ||||||||| |||||||||||||| || ||||| Sbjct 382750 TTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTAACTATGTC 382704 >seq364 Length=1300438 Score = 329 bits (364), Expect = 1e-87 Identities = 409/557 (73%), Gaps = 35/557 (6%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 1214974 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTATCTTTGGACATCTGCGTTATT 1214915 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC---ATCAACCCGG 123 |||||||||||| || ||| || ||||||||||||||||| |||| || || | Sbjct 1214914 TTTTAACAGATGTACCACCCTAGTCAAACTCCCCACCTGACTCTGTCTCCATAAAAAGTG 1214855 Query 124 ATCGGCCCGCGAAGGACCT---TAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTT 180 || | | | | || | | ||| ||| | | | | Sbjct 1214854 ATACACATAATATATATATATATATATTTATATAATAGTCATTCACTAAA--------TA 1214803 Query 181 CATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG---- 236 || ||||| ||||||| ||| |||||||||||||||| || |||| Sbjct 1214802 AATGGATTA-GTAAAAACTTTTTAAAAGTAGTGGTATTTCACTGACGTAAAAACATTATT 1214744 Query 237 ----------CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAG 286 || |||||||| ||| |||||| || || ||| |||||||| |||||||| Sbjct 1214743 TCAATTTCTACTACCACTTATACTATACCTCTTAAATCTTTTTACAAAGTCAGACTAGAG 1214684 Query 287 TCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTG 346 | |||| ||||||||||||||||||| ||||||| |||||||| ||||||||| |||| Sbjct 1214683 TAAAGCACAACAGGGTCTTCTTTCCCTGCTGATTTTACCAAGCCCTTTCCCTTGGTTGTG 1214624 Query 347 GTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCAC 406 |||||||||||||| | |||||||||| |||||||||||||||||||| || ||| | Sbjct 1214623 GTTTCGCTAGATAGCAAGTAGGGACAGTAGGAATCTCGTTAATCCATTCCTGATGGTC-C 1214565 Query 407 TAATTAGATGACGAGGCA--TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT 464 | ||| ||| | || |||||||||||||||||||||||||||||||||||||||| Sbjct 1214564 TTTTTA-TCGACCATACATTTTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT 1214506 Query 465 ACCCGCGCTTGGTTGAA--TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522 ||| |||||| ||||| |||| ||| |||||||||| |||||||||||||||||||| Sbjct 1214505 ACCTGCGCTTAATTGAAATTTTCATCAACTTGACATTCAAAGCACTGGGCAGAAATCACA 1214446 Query 523 TTGCGTCAACATCACTT 539 ||| || || | || || Sbjct 1214445 TTGTGTTAATACCAGTT 1214429 >seq361 Length=1293923 Score = 176 bits (194), Expect = 1e-41 Identities = 114/125 (91%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1239166 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTT 1239107 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 | ||||||||| ||| |||||||||| ||||||||||||||||||||||| || || | Sbjct 1239106 GATTGAATTTCATCAAGTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGTTAATAC 1239047 Query 535 CACTT 539 || || Sbjct 1239046 CAGTT 1239042 >seq273 Length=500 Score = 113 bits (124), Expect = 1e-22 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 344 CTTTTAGTCTACACGAGATTTCTGTTCTCATTGAGCTTGTCTTTGGACATCTGCGTTATT 285 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 284 TTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635193917056