Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F000723685.1_202014-05-29] 372 sequences; 24,055,504 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq361 226 9e-57 seq369 203 1e-49 seq367 203 1e-49 seq363 127 6e-27 seq246 127 6e-27 seq357 105 2e-20 >seq361 Length=1293923 Score = 226 bits (250), Expect = 9e-57 Identities = 187/224 (83%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 6 CATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACCTCCCC 64 |||||||||||||| ||| |||| | ||| | || ||||| ||||||||||||| | Sbjct 1233837 CATTCCAATTACAAAACCAAAAATTGGCCTTGCATTGTTATTTCTTGTCACTACCTCTCT 1233778 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 | | |||||||||||| ||||||||||||||||||| ||||||||||| |||||| Sbjct 1233777 TCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCTC 1233718 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGGC 183 ||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| ||||| Sbjct 1233717 AGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGGC 1233659 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 || || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 1233658 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 1233615 Score = 127 bits (140), Expect = 6e-27 Identities = 127/163 (78%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | || ||| | | |||| || | Sbjct 1233490 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAATAAA--AATGTCAAGTAGA 1233433 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA--CTTAGA 460 | ||||||| ||||||||||| ||||||||||| |||| | | |||| ||| | Sbjct 1233432 CTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATATATATACTTTCA 1233373 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 1233372 CTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 1233330 >seq369 Length=2804353 Score = 203 bits (224), Expect = 1e-49 Identities = 163/194 (84%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 35 TGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGC 94 ||||| ||||| ||||||||||||| | | | | |||||||||||| ||||||||| Sbjct 2741370 TGTATTGTTATTTCTTGTCACTACCTCTCTTTTTTAGAATTGGGTAATTTACGCGCCTGC 2741311 Query 95 TGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATT 154 |||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2741310 TGCCTTCCTTAGATGTGGTAGCTATTTCTCAGGCTCCCTCTCCGGAATCGAACTCTAATT 2741251 Query 155 CCCCGTTACCCGTTGATA-CCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGC 213 |||||||||||| | ||| ||||| |||| || || |||| |||| |||| ||||||| | Sbjct 2741250 CCCCGTTACCCG-TCATAGCCATGTTAGGTCAATACCCTAACATCAAAAGCTGATAGGTC 2741192 Query 214 AGAAATTTGAATGA 227 ||| | | || ||| Sbjct 2741191 AGATACTCGATTGA 2741178 Score = 89.7 bits (98), Expect = 2e-15 Identities = 109/145 (75%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 339 TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAA 398 |||| || ||||||||| ||| || || ||||||| | || ||| || ||||| Sbjct 2741061 TTTTCACAAGTATTAGCTACAGATTTTCCGTAGTTATCCTTATATTAAAA-AC-ATCAAG 2741004 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTA--TACT 456 || | ||||||| ||||||||||| |||||||||||| | ||| || | || |||| Sbjct 2741003 TAGATTATAACTGTTTTAATGAGCCGTTCGCAGTTTCAATATATTACTTACATATGTACT 2740944 Query 457 TAGACATGCATGGCTTAATCTTTGA 481 | || ||||||||||||||| ||| Sbjct 2740943 TTCACTTGCATGGCTTAATCTGTGA 2740919 >seq367 Length=1919181 Score = 203 bits (224), Expect = 1e-49 Identities = 163/194 (84%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 35 TGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGC 94 ||||| ||||| ||||||||||||| | | | | |||||||||||| ||||||||| Sbjct 1844455 TGTATTGTTATTTCTTGTCACTACCTCTCTTTTTTAGAATTGGGTAATTTACGCGCCTGC 1844396 Query 95 TGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATT 154 |||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1844395 TGCCTTCCTTAGATGTGGTAGCTATTTCTCAGGCTCCCTCTCCGGAATCGAACTCTAATT 1844336 Query 155 CCCCGTTACCCGTTGATA-CCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGC 213 |||||||||||| | ||| ||||| |||| || || |||| |||| |||| ||||||| | Sbjct 1844335 CCCCGTTACCCG-TCATAGCCATGTTAGGTCAATACCCTAACATCAAAAGCTGATAGGTC 1844277 Query 214 AGAAATTTGAATGA 227 ||| | | || ||| Sbjct 1844276 AGATACTCGATTGA 1844263 Score = 89.7 bits (98), Expect = 2e-15 Identities = 109/145 (75%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 339 TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAA 398 |||| || ||||||||| ||| || || ||||||| | || ||| || ||||| Sbjct 1844146 TTTTCACAAGTATTAGCTACAGATTTTCCGTAGTTATCCTTATATTAAAA-AC-ATCAAG 1844089 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTA--TACT 456 || | ||||||| ||||||||||| |||||||||||| | ||| || | || |||| Sbjct 1844088 TAGATTATAACTGTTTTAATGAGCCGTTCGCAGTTTCAATATATTACTTACATATGTACT 1844029 Query 457 TAGACATGCATGGCTTAATCTTTGA 481 | || ||||||||||||||| ||| Sbjct 1844028 TTCACTTGCATGGCTTAATCTGTGA 1844004 >seq363 Length=1309936 Score = 127 bits (140), Expect = 6e-27 Identities = 127/163 (78%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | || ||| | | |||| || | Sbjct 967237 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAATAAA--AATGTCAAGTAGA 967180 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA--CTTAGA 460 | ||||||| ||||||||||| ||||||||||| |||| | | |||| ||| | Sbjct 967179 CTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATATATATACTTTCA 967120 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 967119 CTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 967077 >seq246 Length=1900 Score = 127 bits (140), Expect = 6e-27 Identities = 132/168 (79%), Gaps = 5/168 (3%) Strand=Plus/Minus Query 339 TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAA 398 |||| || ||||||||| ||| || || ||||||| | || ||| || ||||| Sbjct 1720 TTTTCACAAGTATTAGCTACAGATTTTCCGTAGTTATCCTTATATTAAAA-AC-ATCAAG 1663 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTG-CTTAT--AC 455 || | ||||||| ||||||||||| |||||||||||| | ||| ||| | ||| || Sbjct 1662 TAGATTATAACTGTTTTAATGAGCCGTTCGCAGTTTCAATATATTTATTTACATATGTAC 1603 Query 456 TTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 || || ||||||||||||||| ||||||||||||||||||||||||| Sbjct 1602 TTTCACTTGCATGGCTTAATCTGTGAGACAAGCATATGACTACTGGCA 1555 >seq357 Length=496884 Score = 105 bits (116), Expect = 2e-20 Identities = 118/154 (77%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 339 TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAA 398 |||| || ||||||||| ||| || || ||||||| | || ||| || ||||| Sbjct 376081 TTTTCACAAGTATTAGCTACAGATTTTCCGTAGTTATCCTTATATTAAAA-AC-ATCAAG 376024 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTA--TACT 456 || | ||||||| ||||||||||| |||||||||||| | ||| || | || |||| Sbjct 376023 TAGATTATAACTGTTTTAATGAGCCGTTCGCAGTTTCAATATATTACTTACATATGTACT 375964 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCAT 490 | || ||||||||||||||| |||||||||||| Sbjct 375963 TTCACTTGCATGGCTTAATCTGTGAGACAAGCAT 375930 Score = 102 bits (112), Expect = 2e-19 Identities = 84/100 (84%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 129 TCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGGCCACT 187 ||||||||||||||||||| |||||||||||||||||| | ||| ||||| |||| || | Sbjct 376296 TCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGGTCAAT 376238 Query 188 ATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 | |||| |||| |||| ||||||| |||| | | || ||| Sbjct 376237 ACCCTAACATCAAAAGCTGATAGGTCAGATACTCGATTGA 376198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510394381312