Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq10 95.1 5e-17 seq504 80.6 1e-12 >seq10 Length=1076571 Score = 95.1 bits (104), Expect = 5e-17 Identities = 120/161 (75%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAA 97 ||||||| ||| |||| || || ||| | || | | | | || ||||| ||||||||| Sbjct 1052425 CGAGTCGTGTTCTTTGAGATTGGAGCACAAATACGTGTGATACATTTCACATAAAGCTAA 1052484 Query 98 ATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTG 156 |||| | |||||||||||| ||||||| |||| ||||||||||| || ||| | Sbjct 1052485 ATATGTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAG 1052544 Query 157 GAAAGAG-AGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 ||| ||| | ||||| || || |||||| ||| | | |||| Sbjct 1052545 GAATGAGCAATTAAATAGTACCTGAAATCGTTAAGATGGAA 1052585 >seq504 Length=909 Score = 80.6 bits (88), Expect = 1e-12 Identities = 101/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 545 ATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGT 604 ||||||||| ||| | | |||| |||||||| || ||||||| || ||| || | Sbjct 399 ATTTGAGTATGAGTACATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGATGAGATT 340 Query 605 GAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCA 664 |||| |||| |||| |||| |||||| ||| | | ||| ||||||||||| || | | Sbjct 339 GAAGTCAGACGAAAGTCTGATGGAGGATCGAGTTGATACTGACGTGCAAATCGTTCATTA 280 Query 665 AATTTGGGTATAGGGGCGA 683 | | || ||||||||| Sbjct 279 CAATCACGTTTAGGGGCGA 261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079983333350