Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20reichenowi_20[genbank_20GCA_5F001601855.1_202016-04-08] 777 sequences; 20,501,737 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq10 226 9e-57 seq12 127 6e-27 >seq10 Length=1076571 Score = 226 bits (250), Expect = 9e-57 Identities = 187/224 (83%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 6 CATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACCTCCCC 64 |||||||||||||| ||| |||| | ||| | || ||||| ||||||||||||| | Sbjct 1049853 CATTCCAATTACAAAACCAAAAATTGGCCTTGCATTGTTATTTCTTGTCACTACCTCTCT 1049794 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 | | |||||||||||| ||||||||||||||||||| ||||||||||| |||||| Sbjct 1049793 TCTTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCTC 1049734 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGGC 183 ||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| ||||| Sbjct 1049733 AGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGGC 1049675 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 || || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 1049674 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 1049631 Score = 127 bits (140), Expect = 6e-27 Identities = 127/163 (78%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | || ||| | | |||| || | Sbjct 1049506 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAATAAA--AATGTCAAGTAGA 1049449 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA--CTTAGA 460 | ||||||| ||||||||||| ||||||||||| |||| | | |||| ||| | Sbjct 1049448 CTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATATATATACTTTCA 1049389 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 1049388 CTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 1049346 >seq12 Length=1150678 Score = 127 bits (140), Expect = 6e-27 Identities = 127/163 (78%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | || ||| | | |||| || | Sbjct 884223 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAATAAA--AATGTCAAGTAGA 884166 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA--CTTAGA 460 | ||||||| ||||||||||| ||||||||||| |||| | | |||| ||| | Sbjct 884165 CTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATATATATACTTTCA 884106 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 884105 CTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 884063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510388264192