Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq22 122 2e-25 seq5 122 2e-25 seq19 87.8 3e-15 seq9 87.8 3e-15 >seq22 Length=51857 Score = 122 bits (134), Expect = 2e-25 Identities = 186/264 (70%), Gaps = 26/264 (10%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-------------GCTCGAATA 121 ||||||||| |||||||||||||||||||| | ||| | | ||||| Sbjct 51205 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAAACATTTAAAGCGTTTTCGCGTTTGAATA 51264 Query 122 CATTAGCATGGAATAATAGAATAGGACGTGCG------GTTCTATTTTGTTGGTTTCTAG 175 | ||||||||||||| | ||| | || | ||||| |||| || ||| | Sbjct 51265 CTATAGCATGGAATAACAAAATTGAACAAGTCAAATTTGTTCTTTTTTCTTATTTT---G 51321 Query 176 GACCGCCGTAATGATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTG 234 | | || | |||||||||| ||| | ||||| | ||||||| ||||||||||| Sbjct 51322 G--CTTAGTTACGATTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAGGTG 51379 Query 235 AAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCAT 294 |||||||| ||||| || |||| ||| ||||||||||| || || | || || ||| Sbjct 51380 AAATTCTTAGATTTTCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCAT 51439 Query 295 TAATCAGTGAACGAAAGTTAGGGG 318 |||||| |||||||||||| ||| Sbjct 51440 TAATCA-AGAACGAAAGTTAAGGG 51462 >seq5 Length=1553486 Score = 122 bits (134), Expect = 2e-25 Identities = 186/264 (70%), Gaps = 26/264 (10%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-------------GCTCGAATA 121 ||||||||| |||||||||||||||||||| | ||| | | ||||| Sbjct 1222 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAAACATTTAAAGCGTTTTCGCGTTTGAATA 1163 Query 122 CATTAGCATGGAATAATAGAATAGGACGTGCG------GTTCTATTTTGTTGGTTTCTAG 175 | ||||||||||||| | ||| | || | ||||| |||| || ||| | Sbjct 1162 CTATAGCATGGAATAACAAAATTGAACAAGTCAAATTTGTTCTTTTTTCTTATTTT---G 1106 Query 176 GACCGCCGTAATGATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTG 234 | | || | |||||||||| ||| | ||||| | ||||||| ||||||||||| Sbjct 1105 G--CTTAGTTACGATTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAGGTG 1048 Query 235 AAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCAT 294 |||||||| ||||| || |||| ||| ||||||||||| || || | || || ||| Sbjct 1047 AAATTCTTAGATTTTCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCAT 988 Query 295 TAATCAGTGAACGAAAGTTAGGGG 318 |||||| |||||||||||| ||| Sbjct 987 TAATCA-AGAACGAAAGTTAAGGG 965 >seq19 Length=70355 Score = 87.8 bits (96), Expect = 3e-15 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 190 TTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 |||||||| ||| | || || | ||||||| || ||||||||||||||| ||||| Sbjct 69518 TTAATAGGAGTAGATTGGAGGCATTTGTATTCAGATGCTAGAGGTGAAATTCTTAGATTT 69459 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 || |||| ||| ||||||||||| || || | || || ||||||||| |||||| Sbjct 69458 TCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCATTAATCA-AGAACGA 69400 Query 309 AAGTTAGGGG 318 |||||| ||| Sbjct 69399 AAGTTAAGGG 69390 >seq9 Length=1049758 Score = 87.8 bits (96), Expect = 3e-15 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 190 TTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 |||||||| ||| | || || | ||||||| || ||||||||||||||| ||||| Sbjct 162083 TTAATAGGAGTAGATTGGAGGCATTTGTATTCAGATGCTAGAGGTGAAATTCTTAGATTT 162024 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 || |||| ||| ||||||||||| || || | || || ||||||||| |||||| Sbjct 162023 TCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCATTAATCA-AGAACGA 161965 Query 309 AAGTTAGGGG 318 |||||| ||| Sbjct 161964 AAGTTAAGGG 161955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915199395968