Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq11 98.7 4e-18 seq19 95.1 5e-17 seq9 95.1 5e-17 >seq11 Length=775211 Score = 98.7 bits (108), Expect = 4e-18 Identities = 120/160 (75%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGG--TAAATTTCTTCTAAAGCTAA 97 |||||| ||| |||| || || ||| | ||||| | | || ||||| ||||||||| Sbjct 774720 GAGTCGTGTTCTTTGAGATTGGAGCAC-AAATGCGTGTGATACATTTCACATAAAGCTAA 774662 Query 98 ATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTG 156 ||||| | |||||||||||| ||||||| |||| ||||||||||| || ||| | Sbjct 774661 ATATTTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAG 774602 Query 157 GAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 ||| ||| ||||| || || |||||| ||| | | |||| Sbjct 774601 GAATGAGGCTTAAATAGTACCTGAAATCGTTAAGATGGAA 774562 Score = 77.0 bits (84), Expect = 1e-11 Identities = 99/137 (72%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||| ||| ||| |||| |||||||| || ||||||| || ||| || ||| Sbjct 774117 TTGAGTATGAGTATATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGATGAGATTGA 774058 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||| | ||| | | | ||| ||||||||||| || | | Sbjct 774057 AGTCAGACGAAAGTCTGATGGAAGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 773998 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 773997 ATCACGTTTAGGGGCGA 773981 >seq19 Length=70355 Score = 95.1 bits (104), Expect = 5e-17 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||| | ||| |||| || || ||| | || || | | || ||||| |||||||||| Sbjct 61521 GAGTAGTGTTCTTTGAGATTGGAGCACAAATGTGTGTGATAGATTTCACATAAAGCTAAA 61462 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 |||| | ||||||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 61461 TATTTGTAGGAGACCGATAGTAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 61402 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || |||| ||||| || || |||||| ||| | | |||| Sbjct 61401 AATGAGATTTAAATAGTACCTGAAATCGTTAAGATGGAA 61363 Score = 77.0 bits (84), Expect = 1e-11 Identities = 99/137 (72%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 |||||||| || ||| |||| |||||||| || ||||||| || || || ||| Sbjct 60886 TTGAGTAAAAGTATATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGGTGAGATTGA 60827 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||||| ||| | | | ||| ||||||||||| || | | Sbjct 60826 AGTCAGACGAAAGTCTGATGGAGGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 60767 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 60766 ATCACGTTTAGGGGCGA 60750 >seq9 Length=1049758 Score = 95.1 bits (104), Expect = 5e-17 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||| | ||| |||| || || ||| | || ||| | | || |||| |||||||||| Sbjct 155234 GAGTTGTGTTCTTTGAGATTGGAGCACGAATATGTGTGATACGTTTCACATAAAGCTAAA 155175 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 |||| | ||||||||||| ||||||| |||| ||||||||||| ||||||| || Sbjct 155174 TATTTGTAGGAGACCGATAGTAAACAAGTACCGTGAGGGAAAGATGAAATAGCACTTAGG 155115 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 || |||| ||||| | | |||||| ||| | | |||| Sbjct 155114 AATGAGATTTAAATAATGCCTGAAATCGTTAAGATGGAA 155076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079998584300