Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20petteri_20[genbank_20GCA_5F000524515.1_202014 -01-31] 66 sequences; 18,931,523 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq5 113 9e-23 seq19 111 3e-22 seq9 111 3e-22 >seq5 Length=1553486 Score = 113 bits (124), Expect = 9e-23 Identities = 202/304 (66%), Gaps = 46/304 (15%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 418 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 359 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT----- 184 |||| |||||||| | || ||| ||||||| |||||||||| | ||||||| Sbjct 358 GATGTCCTTAGATATACTAGGCTGCACGCGTGCTACACTGATATGTAAAACGAGTGCTTA 299 Query 185 --------------------TCA-------------------TCACCTTGGCCGGAAGGT 205 ||| | ||| | | || || Sbjct 298 AATTTATATTTGCGCGTGGGTCATGCCTGCGCGCGATATATTTTTCCTCCACTGAAAAGT 239 Query 206 CTGGGTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 | ||||||||| | || | | ||||| |||||||||| |||||||||||| |||| Sbjct 238 GTAGGTAATCTTTATCAATACATATCGTGATGGGGATAGATTATTGCAATTATTAATCTT 179 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 ||||||||||||||||||||| | ||||||| | | ||| ||||||||||||||| Sbjct 178 GAACGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTGCCCTT 119 Query 325 TGTA 328 |||| Sbjct 118 TGTA 115 >seq19 Length=70355 Score = 111 bits (122), Expect = 3e-22 Identities = 98/121 (81%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 209 GGTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAA 267 ||||||||| | || | | ||||| |||||||||| |||||||||||| |||| || Sbjct 68642 GGTAATCTTTATCAATACATATCGTGATGGGGATAGATTATTGCAATTATTAATCTTGAA 68583 Query 268 CGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGT 327 ||||||||||||||||||| | ||||||| | | ||| |||||||||||||||||| Sbjct 68582 CGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTGCCCTTTGT 68523 Query 328 A 328 | Sbjct 68522 A 68522 Score = 91.5 bits (100), Expect = 3e-16 Identities = 83/103 (81%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGG---CTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 |||||||||||| || || | || | || | |||||||| |||||| ||||||||| Sbjct 68836 GCTTCTTAGAGGAACGATGTGTGCCTAACGC--AAGGAAGTTTAAGGCAACAACAGGTCT 68779 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||||| |||||||| | || ||| ||||||| |||||||||| Sbjct 68778 GTGATGTCCTTAGATATACTAGGCTGCACGCGTGCTACACTGA 68736 >seq9 Length=1049758 Score = 111 bits (122), Expect = 3e-22 Identities = 98/121 (81%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 209 GGTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAA 267 ||||||||| | || | | ||||| |||||||||| |||||||||||| |||| || Sbjct 158244 GGTAATCTTTATCAATACATATCGTGATGGGGATAGATTATTGCAATTATTAATCTTGAA 158185 Query 268 CGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGT 327 ||||||||||||||||||| | ||||||| | | ||| |||||||||||||||||| Sbjct 158184 CGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTGCCCTTTGT 158125 Query 328 A 328 | Sbjct 158124 A 158124 Score = 87.8 bits (96), Expect = 3e-15 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 |||||||| |||||| ||||||||||||||| |||||||| | || ||| ||||||| || Sbjct 158405 GGAAGTTTAAGGCAACAACAGGTCTGTGATGTCCTTAGATATACTAGGCTGCACGCGTGC 158346 Query 163 TACACTGA 170 |||||||| Sbjct 158345 TACACTGA 158338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947199374848