Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq17 120 5e-25 seq3 114 2e-23 seq9 111 2e-22 seq8 111 2e-22 >seq17 Length=33757 Score = 120 bits (132), Expect = 5e-25 Identities = 190/277 (69%), Gaps = 48/277 (17%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 32759 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 32702 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||| ||| | | |||||| Sbjct 32701 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTATTGATAAAGAT 32642 Query 119 TACCCGGACCTGTC--------------------GGCCAAGG--TG------------AT 144 |||| || | || ||| ||| || || Sbjct 32641 TACCTACACTTTTCAGTGGAGGAAAAATATATCGCGCCCAGGCATGACCCAGGCGCAAAT 32582 Query 145 A----------GACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAA 194 | ||||||| | | ||||||||||| ||||||| ||| || | |||||| Sbjct 32581 ATAAATTTAAGCACTCGTTTTACATATCAGTGTAGCACGCGTGCAGCCTAGTATATCTAA 32522 Query 195 GGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 || ||||||||||||||| |||||| |||||||| || Sbjct 32521 GGACATCACAGACCTGTTGTTGCCTTAAACTTCCTTG 32485 >seq3 Length=1704331 Score = 114 bits (126), Expect = 2e-23 Identities = 189/277 (68%), Gaps = 48/277 (17%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 1703956 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 1703899 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || | ||||||| |||||||||||||||| ||| | | |||||| Sbjct 1703898 CTCGTTCAAGATTAATAGTTGCAATAATCTATCCCCATCACGATATGTATTGATAAAGAT 1703839 Query 119 TACCCGGACCTGTC--------------------GGCCAAGG--TG------------AT 144 |||| || | || ||| ||| || || Sbjct 1703838 TACCTACACTTTTCAGTGGAGGAAAAATATATCGCGCCCAGGCATGACCCAGGCGCAAAT 1703779 Query 145 A----------GACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAA 194 | ||||||| | | ||||||||||| ||||||| ||| || | |||||| Sbjct 1703778 ATAAATTTAAGCACTCGTTTTACATATCAGTGTAGCACGCGTGCAGCCTAGTATATCTAA 1703719 Query 195 GGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 || ||||||||||||||| |||||| |||||||| || Sbjct 1703718 GGACATCACAGACCTGTTGTTGCCTTAAACTTCCTTG 1703682 >seq9 Length=887228 Score = 111 bits (122), Expect = 2e-22 Identities = 101/124 (81%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 708231 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 708174 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || | ||||||| |||||||||||||||| ||| | | |||||| Sbjct 708173 CTCGTTCAAGATTAATAGTTGCAATAATCTATCCCCATCACGATATGTATTGATAAAGAT 708114 Query 119 TACC 122 |||| Sbjct 708113 TACC 708110 Score = 95.1 bits (104), Expect = 2e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||| | | ||||||||||| ||||||| ||| || | |||||||| ||||||||| Sbjct 708030 ACTCGTTTTACATATCAGTGTAGCACGCGTGCAGCCTAGTATATCTAAGGACATCACAGA 707971 Query 207 CCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||| |||||||| || Sbjct 707970 CCTGTTGTTGCCTTAAACTTCCTTG 707946 >seq8 Length=956651 Score = 111 bits (122), Expect = 2e-22 Identities = 101/124 (81%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 866673 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 866616 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || | ||||||| |||||||||||||||| ||| | | |||||| Sbjct 866615 CTCGTTCAAGATTAATAGTTGCAATAATCTATCCCCATCACGATATGTATTGATAAAGAT 866556 Query 119 TACC 122 |||| Sbjct 866555 TACC 866552 Score = 95.1 bits (104), Expect = 2e-17 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||| | | ||||||||||| ||||||| ||| || | |||||||| ||||||||| Sbjct 866472 ACTCGTTTTACATATCAGTGTAGCACGCGTGCAGCCTAGTATATCTAAGGACATCACAGA 866413 Query 207 CCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||| |||||||| || Sbjct 866412 CCTGTTGTTGCCTTAAACTTCCTTG 866388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999643035