Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq17 122 2e-25 seq3 122 2e-25 seq9 87.8 3e-15 seq8 87.8 3e-15 >seq17 Length=33757 Score = 122 bits (134), Expect = 2e-25 Identities = 186/264 (70%), Gaps = 26/264 (10%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-------------GCTCGAATA 121 ||||||||| |||||||||||||||||||| | ||| | | ||||| Sbjct 31653 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAAACATTTAAAGCGTTTTCGCGTTTGAATA 31712 Query 122 CATTAGCATGGAATAATAGAATAGGACGTGCG------GTTCTATTTTGTTGGTTTCTAG 175 | ||||||||||||| | ||| | || | ||||| |||| || ||| | Sbjct 31713 CTATAGCATGGAATAACAAAATTGAACAAGTCAAATTTGTTCTTTTTTCTTATTTT---G 31769 Query 176 GACCGCCGTAATGATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTG 234 | | || | |||||||||| ||| | ||||| | ||||||| ||||||||||| Sbjct 31770 G--CTTAGTTACGATTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAGGTG 31827 Query 235 AAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCAT 294 |||||||| ||||| || |||| ||| ||||||||||| || || | || || ||| Sbjct 31828 AAATTCTTAGATTTTCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCAT 31887 Query 295 TAATCAGTGAACGAAAGTTAGGGG 318 |||||| |||||||||||| ||| Sbjct 31888 TAATCA-AGAACGAAAGTTAAGGG 31910 >seq3 Length=1704331 Score = 122 bits (134), Expect = 2e-25 Identities = 186/264 (70%), Gaps = 26/264 (10%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-------------GCTCGAATA 121 ||||||||| |||||||||||||||||||| | ||| | | ||||| Sbjct 1702850 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAAACATTTAAAGCGTTTTCGCGTTTGAATA 1702909 Query 122 CATTAGCATGGAATAATAGAATAGGACGTGCG------GTTCTATTTTGTTGGTTTCTAG 175 | ||||||||||||| | ||| | || | ||||| |||| || ||| | Sbjct 1702910 CTATAGCATGGAATAACAAAATTGAACAAGTCAAATTTGTTCTTTTTTCTTATTTT---G 1702966 Query 176 GACCGCCGTAATGATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTG 234 | | || | |||||||||| ||| | ||||| | ||||||| ||||||||||| Sbjct 1702967 G--CTTAGTTACGATTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAGGTG 1703024 Query 235 AAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCAT 294 |||||||| ||||| || |||| ||| ||||||||||| || || | || || ||| Sbjct 1703025 AAATTCTTAGATTTTCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCAT 1703084 Query 295 TAATCAGTGAACGAAAGTTAGGGG 318 |||||| |||||||||||| ||| Sbjct 1703085 TAATCA-AGAACGAAAGTTAAGGG 1703107 >seq9 Length=887228 Score = 87.8 bits (96), Expect = 3e-15 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 190 TTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 |||||||| ||| | || || | ||||||| || ||||||||||||||| ||||| Sbjct 707234 TTAATAGGAGTAGATTGGAGGCATTTGTATTCAGATGCTAGAGGTGAAATTCTTAGATTT 707293 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 || |||| ||| ||||||||||| || || | || || ||||||||| |||||| Sbjct 707294 TCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCATTAATCA-AGAACGA 707352 Query 309 AAGTTAGGGG 318 |||||| ||| Sbjct 707353 AAGTTAAGGG 707362 >seq8 Length=956651 Score = 87.8 bits (96), Expect = 3e-15 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 190 TTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 |||||||| ||| | || || | ||||||| || ||||||||||||||| ||||| Sbjct 865676 TTAATAGGAGTAGATTGGAGGCATTTGTATTCAGATGCTAGAGGTGAAATTCTTAGATTT 865735 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 || |||| ||| ||||||||||| || || | || || ||||||||| |||||| Sbjct 865736 TCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCATTAATCA-AGAACGA 865794 Query 309 AAGTTAGGGG 318 |||||| ||| Sbjct 865795 AAGTTAAGGG 865804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915199551552