Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq9 102 3e-19 seq11 98.7 4e-18 seq8 93.3 2e-16 >seq9 Length=887228 Score = 102 bits (112), Expect = 3e-19 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGG-GAGGTAAATTTCTTCTAAAGCTAAA 98 |||| | ||| |||| || || ||| | || | | | | || ||||| |||||||||| Sbjct 711032 GAGTAGTGTTCTTTGAGATTGGAGCGCAAATTCGTGTGATATATTTCACATAAAGCTAAA 711091 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 |||| | |||||||||||| ||||||| |||| ||||||||||| |||||| || Sbjct 711092 TATTTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGCACTCAGG 711151 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTT 187 || |||| ||||| || || |||||| ||| Sbjct 711152 AATGAGATTTAAATAGTACCTGAAATCGTT 711181 >seq11 Length=733468 Score = 98.7 bits (108), Expect = 4e-18 Identities = 120/160 (75%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGG--TAAATTTCTTCTAAAGCTAA 97 |||||| ||| |||| || || ||| | ||||| | | || ||||| ||||||||| Sbjct 733157 GAGTCGTGTTCTTTGAGATTGGAGCAC-AAATGCGTGTGATACATTTCACATAAAGCTAA 733099 Query 98 ATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTG 156 ||||| | |||||||||||| ||||||| |||| ||||||||||| || ||| | Sbjct 733098 ATATTTGTAGGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAG 733039 Query 157 GAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 ||| ||| ||||| || || |||||| ||| | | |||| Sbjct 733038 GAATGAGGCTTAAATAGTACCTGAAATCGTTAAGATGGAA 732999 Score = 77.0 bits (84), Expect = 1e-11 Identities = 99/137 (72%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 547 TTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGA 606 ||||||| ||| ||| |||| |||||||| || ||||||| || ||| || ||| Sbjct 732555 TTGAGTATGAGTATATTTGTTAGGACCCGAGAGGCTTTGAACTAAGCGTGATGAGATTGA 732496 Query 607 AGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAA 666 || |||| |||| |||| |||| | ||| | | | ||| ||||||||||| || | | Sbjct 732495 AGTCAGACGAAAGTCTGATGGAAGATCGAATTGATACTGACGTGCAAATCGTTCATTTCA 732436 Query 667 TTTGGGTATAGGGGCGA 683 | || ||||||||| Sbjct 732435 ATCACGTTTAGGGGCGA 732419 >seq8 Length=956651 Score = 93.3 bits (102), Expect = 2e-16 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||| | ||| |||| || || ||| | || || | | || ||||| |||||||||| Sbjct 874619 GAGTAGTGTTCTTTGAGATTGGAGCACAAATGTGTGTGATAGATTTCACATAAAGCTAAA 874678 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA-AGCACTTTGG 157 |||| | ||||||||||| ||||||| |||| ||||||||||| || ||| || Sbjct 874679 TATTTGTAGGAGACCGATAGTAAACAAGTACCGTGAGGGAAAGATGAAATAGTACTCAGG 874738 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTT 187 || |||| ||||| || || |||||| ||| Sbjct 874739 AATGAGATTTAAATAGTACCTGAAATCGTT 874768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079998948950