Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq17 116 7e-24 seq3 113 9e-23 seq9 107 4e-21 seq8 107 4e-21 >seq17 Length=33757 Score = 116 bits (128), Expect = 7e-24 Identities = 203/304 (67%), Gaps = 46/304 (15%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 32455 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 32514 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||| |||||||| | || ||| ||||||| |||||||||| | ||||||| | | Sbjct 32515 GATGTCCTTAGATATACTAGGCTGCACGCGTGCTACACTGATATGTAAAACGAGTGCTTA 32574 Query 190 A------------------------CCTTGGCCGGA--------------------AGGT 205 | ||| ||| || | || Sbjct 32575 AATTTATATTTGCGCCTGGGTCATGCCTGGGCGCGATATATTTTTCCTCCACTGAAAAGT 32634 Query 206 CTGGGTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 | ||||||||| | || | | ||||| |||||||||| |||||||||||| |||| Sbjct 32635 GTAGGTAATCTTTATCAATACATATCGTGATGGGGATAGATTATTGCAATTATTAATCTT 32694 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 ||||||||||||||||||||| | ||||||| | | ||| ||||||||||||||| Sbjct 32695 GAACGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTGCCCTT 32754 Query 325 TGTA 328 |||| Sbjct 32755 TGTA 32758 >seq3 Length=1704331 Score = 113 bits (124), Expect = 9e-23 Identities = 202/304 (66%), Gaps = 46/304 (15%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||| || || | || | | | |||||||| |||||| ||||||||||| Sbjct 1703652 GCTTCTTAGAGGAACGATGTGTGTCTAACACAAGGAAGTTTAAGGCAACAACAGGTCTGT 1703711 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 |||| |||||||| | || ||| ||||||| |||||||||| | ||||||| | | Sbjct 1703712 GATGTCCTTAGATATACTAGGCTGCACGCGTGCTACACTGATATGTAAAACGAGTGCTTA 1703771 Query 190 A------------------------CCTTGGCCGGA--------------------AGGT 205 | ||| ||| || | || Sbjct 1703772 AATTTATATTTGCGCCTGGGTCATGCCTGGGCGCGATATATTTTTCCTCCACTGAAAAGT 1703831 Query 206 CTGGGTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTT 264 | ||||||||| | || | | ||||| |||||||||| ||||||| |||| |||| Sbjct 1703832 GTAGGTAATCTTTATCAATACATATCGTGATGGGGATAGATTATTGCAACTATTAATCTT 1703891 Query 265 CAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTT 324 ||||||||||||||||||||| | ||||||| | | ||| ||||||||||||||| Sbjct 1703892 GAACGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTGCCCTT 1703951 Query 325 TGTA 328 |||| Sbjct 1703952 TGTA 1703955 >seq9 Length=887228 Score = 107 bits (118), Expect = 4e-21 Identities = 97/121 (80%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 209 GGTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAA 267 ||||||||| | || | | ||||| |||||||||| ||||||| |||| |||| || Sbjct 708110 GGTAATCTTTATCAATACATATCGTGATGGGGATAGATTATTGCAACTATTAATCTTGAA 708169 Query 268 CGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGT 327 ||||||||||||||||||| | ||||||| | | ||| |||||||||||||||||| Sbjct 708170 CGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTGCCCTTTGT 708229 Query 328 A 328 | Sbjct 708230 A 708230 Score = 91.5 bits (100), Expect = 3e-16 Identities = 83/103 (81%), Gaps = 5/103 (5%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGG---CTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 |||||||||||| || || | || | || | |||||||| |||||| ||||||||| Sbjct 707916 GCTTCTTAGAGGAACGATGTGTGCCTAACGC--AAGGAAGTTTAAGGCAACAACAGGTCT 707973 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||||| |||||||| | || ||| ||||||| |||||||||| Sbjct 707974 GTGATGTCCTTAGATATACTAGGCTGCACGCGTGCTACACTGA 708016 >seq8 Length=956651 Score = 107 bits (118), Expect = 4e-21 Identities = 97/121 (80%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 209 GGTAATCTTGTTAAACTC-TGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAA 267 ||||||||| | || | | ||||| |||||||||| ||||||| |||| |||| || Sbjct 866552 GGTAATCTTTATCAATACATATCGTGATGGGGATAGATTATTGCAACTATTAATCTTGAA 866611 Query 268 CGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGT 327 ||||||||||||||||||| | ||||||| | | ||| |||||||||||||||||| Sbjct 866612 CGAGGAATGCCTAGTAAGCATGATTCATCAGATTGTGCTGACTACGTCCCTGCCCTTTGT 866671 Query 328 A 328 | Sbjct 866672 A 866672 Score = 91.5 bits (100), Expect = 3e-16 Identities = 83/103 (81%), Gaps = 5/103 (5%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCGG---CTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 |||||||||||| || || | || | || | |||||||| |||||| ||||||||| Sbjct 866358 GCTTCTTAGAGGAACGATGTGTGCCTAACGC--AAGGAAGTTTAAGGCAACAACAGGTCT 866415 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA 170 |||||| |||||||| | || ||| ||||||| |||||||||| Sbjct 866416 GTGATGTCCTTAGATATACTAGGCTGCACGCGTGCTACACTGA 866458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947199535872