Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq11 479 9e-133 seq15 462 7e-128 seq8 455 1e-125 seq9 338 2e-90 >seq11 Length=733468 Score = 479 bits (530), Expect = 9e-133 Identities = 456/587 (78%), Gaps = 57/587 (10%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 730384 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 730443 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGT---CATCAACCCGG 123 ||||||||||||| ||||||||| ||||||||||||||| | |||| ||| | ||| Sbjct 730444 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTCTCCATAGAAGCGG 730503 Query 124 -------ATC-GGCCCGCGAAGGACCTTA----------------------ACGC----- 148 || |||||| | || ||| | |||| Sbjct 730504 GAGAGAAATGAGGCCCGGG--GGGCCTCATCAAACTCAAATAATATCAGATACGCGCGAC 730561 Query 149 CAGAAAATGGTCG---GTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAA 205 ||| ||| | | || || | | || | || ||| |||||||| ||| ||| Sbjct 730562 CAGCAAACTGGCAAACGTAAATATATTTCCCTATAAATAGAT-AAGTAAAACAACTTTAA 730620 Query 206 GGGTAGTGGTATTTCACTTGCGCCGAAA-------------CGGCTCCCACTTATTCTAC 252 |||||||||||||||| ||| ||| | |||||||||||| |||| Sbjct 730621 AAGTAGTGGTATTTCACTGTCGCAAAAATATATTTCAATCTCTGCTCCCACTTATGCTAC 730680 Query 253 ACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCC 312 |||||| ||||| |||||||||| | ||||||||| |||||||||||||||||||||||| Sbjct 730681 ACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTCAACAGGGTCTTCTTTCCC 730740 Query 313 CGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACA 372 |||||||| |||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 730741 CGCTGATTTGGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAAGTAGGGACA 730800 Query 373 GTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 730801 GTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 730860 Query 433 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTT 492 ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||| | Sbjct 730861 CCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTTGATTGAATTTCATCAAGT 730920 Query 493 TGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTT 539 ||||||||| ||||||||||||||||||||||| || || | || || Sbjct 730921 TGACATTCAAAGCACTGGGCAGAAATCACATTGTGTTAATACCATTT 730967 >seq15 Length=36087 Score = 462 bits (512), Expect = 7e-128 Identities = 320/365 (88%), Gaps = 13/365 (4%) Strand=Plus/Plus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA-------------C 234 ||||||||| ||| ||| |||||||||||||||| ||| ||| | Sbjct 34861 TAAGTAAAACAACTTTAAAAGTAGTGGTATTTCACTGTCGCAAAAATATATTTCAATCTC 34920 Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 |||||||||||| |||||||||| ||||| |||||||||| | ||||||||| |||||| Sbjct 34921 TGCTCCCACTTATGCTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCTC 34980 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 34981 AACAGGGTCTTCTTTCCCCGCTGATTTGGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 35040 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 35041 AGATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 35100 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 35101 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCTT 35160 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 | ||||||||| ||| |||||||||| ||||||||||||||||||||||| || || | Sbjct 35161 GATTGAATTTCATCAAGTTGACATTCAAAGCACTGGGCAGAAATCACATTGTGTTAATAC 35220 Query 535 CACTT 539 || || Sbjct 35221 CATTT 35225 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 34642 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 34701 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 34702 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 34748 >seq8 Length=956651 Score = 455 bits (504), Expect = 1e-125 Identities = 322/370 (87%), Gaps = 15/370 (4%) Strand=Plus/Minus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA-------------- 233 ||||||||| ||| ||| |||||||||||||||| || |||| Sbjct 877252 TAAGTAAAACAACTTTAAAAGTAGTGGTATTTCACTGACGTAGAAAATATATTTCAATCT 877193 Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 | ||||||||||| |||||||||| ||||| |||||||||| | ||||||||| ||||| Sbjct 877192 CTACTCCCACTTATACTACACCTCTTAAGTCGTTTCACAAAGCCAGACTAGAGTAAAGCT 877133 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 877132 CAACAGGGTCTTCTTTCCCCGCTGATTTGGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 877073 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 877072 TAGATAGCAAGTAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 877013 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 877012 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCTGCGCT 876953 Query 474 TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 || ||||||||| ||| |||||||||| ||||||||||||||||||| ||| || || | Sbjct 876952 TGATTGAATTTCATCAAGTTGACATTCAAAGCACTGGGCAGAAATCACTTTGTGTTAATA 876893 Query 534 TCACTTTCTG 543 || |||||| Sbjct 876892 CCA-TTTCTG 876884 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| ||||||||| Sbjct 877480 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCGTTATT 877421 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||||||||||||| ||||||||| ||||||||||||||| | ||||| Sbjct 877420 GTTTAACAGATGTACCGCCCCAGTCAAACTCCCCACCTGGCTATGTC 877374 >seq9 Length=887228 Score = 338 bits (374), Expect = 2e-90 Identities = 420/570 (74%), Gaps = 39/570 (7%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||||||||||||||| |||| ||| ||||| |||| |||| Sbjct 713958 CTTTTAGTCTACAAGAGATTTCTGTTCTCTTTGAGCTTGTCTTTGGACATCTGCATTATT 713899 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC---ATCAACCCGG 123 ||| |||||| | ||||||||| |||||||||||||| | ||||| || ||| || Sbjct 713898 ATTTGACAGATATACCGCCCCAGTTAAACTCCCCACCTGGCTATGTCTCTATATACCTGG 713839 Query 124 ATCG-GCCCGCGAAGG-ACCTTAACGC------------CAGAAAATGGTCGGTGAAGAC 169 | | ||| | ||| || ||| || | || || | | Sbjct 713838 GTGTAGGATAATAAGATAACTTTGCGTTATCTTTCAACACAGTAATTAGTATGTATATAG 713779 Query 170 CAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCC 229 | ||| | | | ||||||||| ||| ||| |||||||||| ||| | ||| Sbjct 713778 TA--TCCTAGTAAATAGATAAGTAAAACAACTTTAAAAGTAGTGGTATCTCATTGTCGCA 713721 Query 230 GAAA-------------CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGT 276 ||| ||||| ||||||||||| ||||||| ||||| |||||||||| Sbjct 713720 AAAATATATTTCAATCTCGGCTTCCACTTATTCTGCACCTCTTAAGTCGTTTCACAAAGC 713661 Query 277 CGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCC 336 | ||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct 713660 CAGACTAGAGTAAAGCACAACAGGGTCTTCTTTCCCCGCTGATTTTACCAAGCCCGTTCC 713601 Query 337 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCA 396 ||||| |||||||||||||||| | | ||||||||||||||| ||||||||||||| | Sbjct 713600 CTTGGTTGTGGTTTCGCTAGATTGCAAGTAGGGACAGTGGGAACCTCGTTAATCCATCCG 713541 Query 397 TGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA---C 453 | | |||||| || | ||||||| ||| | || ||||||||||||| | ||||| Sbjct 713540 T-CTCGTCACAAAAT-CATGACGA-GCAATAGGATACCTTAAGAGAGAGAGAGTTATAGT 713484 Query 454 TCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCA 513 |||||||||| ||| | |||| ||||||||| ||| |||||||||| ||||||||||| Sbjct 713483 TCCCGCCGTTCACCTGTGCTTAATTGAATTTCATCAACTTGACATTCAAAGCACTGGGCA 713424 Query 514 GAAATCACATTGCGTCAACATCACTTTCTG 543 |||||||||||| || || | || |||||| Sbjct 713423 GAAATCACATTGTGTTAATACCA-TTTCTG 713395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635199198752