Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq17 219 1e-54 seq3 219 1e-54 seq9 215 2e-53 seq8 215 2e-53 >seq17 Length=33757 Score = 219 bits (242), Expect = 1e-54 Identities = 186/225 (83%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTG-TATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| || ||| ||| | ||| ||| ||||| ||||||||||||| | Sbjct 31399 TCATTCCAATTATAAAACCAAAATTTGGCCTTATATTGTTATTTCTTGTCACTACCTCTC 31340 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 31339 TTATTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 31280 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGG 182 |||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| |||| Sbjct 31279 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGG 31221 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||| || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 31220 CCAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 31176 Score = 132 bits (146), Expect = 1e-28 Identities = 128/163 (79%), Gaps = 5/163 (3%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | || ||| | | |||| || | Sbjct 31053 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAATAA---AATGTCAAGTAGA 30997 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAGA 460 ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| | Sbjct 30996 TTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTCA 30937 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 30936 CTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 30894 >seq3 Length=1704331 Score = 219 bits (242), Expect = 1e-54 Identities = 186/225 (83%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTG-TATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| || ||| ||| | ||| ||| ||||| ||||||||||||| | Sbjct 1702596 TCATTCCAATTATAAAACCAAAATTTGGCCTTATATTGTTATTTCTTGTCACTACCTCTC 1702537 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 1702536 TTATTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 1702477 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGG 182 |||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| |||| Sbjct 1702476 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGG 1702418 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||| || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 1702417 CCAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 1702373 Score = 132 bits (146), Expect = 1e-28 Identities = 128/163 (79%), Gaps = 5/163 (3%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||| ||||||||| || || || ||||||| | || ||| | | |||| || | Sbjct 1702250 AGCAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAATAA---AATGTCAAGTAGA 1702194 Query 403 CGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACTTAGA 460 ||||||| ||||||||||| ||||||||||| |||| | | || ||||||| | Sbjct 1702193 TTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACTTTCA 1702134 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | ||||||||||||||||||||||||||||||||||||||||| Sbjct 1702133 CTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 1702091 >seq9 Length=887228 Score = 215 bits (238), Expect = 2e-53 Identities = 183/224 (82%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTG-TATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| || ||| ||| | ||| ||| ||||| ||||||||||||| | Sbjct 706840 TCATTCCAATTATAAAACCAAAATTTGGCCTTATATTGTTATTTCTTGTCACTACCTCTC 706781 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 706780 TTATTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 706721 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 |||||||||||||||||||||||| ||||||||||||||||||| | ||||| |||| Sbjct 706720 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCGTCAAAGCCATGTTAGGT 706661 Query 184 CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 || || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 706660 CAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 706617 Score = 131 bits (144), Expect = 5e-28 Identities = 131/167 (78%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 339 TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAA 398 ||||| || ||||||||| || || || ||||||| | || ||| | | |||| Sbjct 706507 TTTTA-CAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAATAA---AATGTCAAG 706452 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACT 456 || | ||||||| ||||||||||| ||||||||||| |||| | | || |||||| Sbjct 706451 TAGATTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACT 706392 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | || ||||||||||||||||||||||||||||||||||||||||| Sbjct 706391 TTCACTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 706345 >seq8 Length=956651 Score = 215 bits (238), Expect = 2e-53 Identities = 185/225 (82%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTG-TATCAGTATTTATTGTCACTACCTCCC 63 |||||||||||| || ||| ||| | ||| ||| ||||| ||||||||||||| | Sbjct 865282 TCATTCCAATTATAAAACCAAAATTTGGCCTTATATTGTTATTTCTTGTCACTACCTCTC 865223 Query 64 CGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCT 123 | | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 865222 TTATTTAGAATTGGGTAATTTACGCGCCTGCTGCCTTCCTTAGATGTGGTAGCTATTTCT 865163 Query 124 CAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA-CCATGGTAGG 182 |||||||||||||||||||||||| |||||||||||||||||| | ||| ||||| |||| Sbjct 865162 CAGGCTCCCTCTCCGGAATCGAACTCTAATTCCCCGTTACCCG-TCATAGCCATGTTAGG 865104 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 || || |||| |||| |||| ||||||| |||||| | || ||| Sbjct 865103 TCAATACCCTAACATCAAAAGCTGATAGGTCAGAAACTCGATTGA 865059 Score = 131 bits (144), Expect = 5e-28 Identities = 131/167 (78%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 339 TTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAA 398 ||||| || ||||||||| || || || ||||||| | || ||| | | |||| Sbjct 864949 TTTTA-CAAGTATTAGCTACAGCTTTTCCGTAGTTATCCTTATAATAA---AATGTCAAG 864894 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT--GCTTATACT 456 || | ||||||| ||||||||||| ||||||||||| |||| | | || |||||| Sbjct 864893 TAGATTATAACTGTTTTAATGAGCCGTTCGCAGTTTCTACATATAAAATATGCATATACT 864834 Query 457 TAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 | || ||||||||||||||||||||||||||||||||||||||||| Sbjct 864833 TTCACTTGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 864787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510399259904