Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2 141 1e-31 seq5 114 2e-23 seq6 75.2 2e-11 >seq2 Length=814089 Score = 141 bits (156), Expect = 1e-31 Identities = 189/265 (71%), Gaps = 36/265 (14%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || ||||| || |||||||||| ||| | Sbjct 136835 GTACAAAGGGCAGGGACGTAGTCAGCACAATCT-GATGAATCATGCTTACTAGGCATT-C 136892 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||| ||| | | |||||| Sbjct 136893 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTACTGATAAAGAT 136952 Query 119 TACCCGGACCTGTCGG--------------------CCAAGGTGA----TA--------G 146 |||| || | || | |||| ||| || Sbjct 136953 TACCTACACTTTTCAGTGGAGGAAAAATGCGAAACAGCAAGCTGAATCGTAATTTTAATA 137012 Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 ||||||| | | ||||||||||| ||||||| ||| || ||||||||| ||||||||| Sbjct 137013 ACTCGTTATACATATCAGTGTAGCACGCGTGCAGCCTAGTTCATCTAAGGACATCACAGA 137072 Query 207 CCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||| |||||||| || Sbjct 137073 CCTGTTGTTGCCTTAAACTTCCTTG 137097 >seq5 Length=1427117 Score = 114 bits (126), Expect = 2e-23 Identities = 102/124 (82%), Gaps = 4/124 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||| | | | || |||| ||| |||||||||| ||| | Sbjct 150367 GTACAAAGGGCAGGGACGTAGTCAGCACAATCTA-ATGAATCGTGCTTACTAGGCATT-C 150424 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| |||| || ||||||||| |||||||||||||||| ||| | | |||||| Sbjct 150425 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCCATCACGATATGTACTGATAAAGAT 150484 Query 119 TACC 122 |||| Sbjct 150485 TACC 150488 Score = 100 bits (110), Expect = 4e-19 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 |||||||| | | ||||||||||| ||||||| ||| || ||||||||| ||||||||| Sbjct 150572 ACTCGTTGTACATATCAGTGTAGCACGCGTGCAGCCTAGTTCATCTAAGGACATCACAGA 150631 Query 207 CCTGTTATTGCCTCAAACTTCCGTG 231 |||||| |||||| |||||||| || Sbjct 150632 CCTGTTGTTGCCTTAAACTTCCTTG 150656 >seq6 Length=1091801 Score = 75.2 bits (82), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 5/104 (5%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||| ||||||||||||||| ||| | | || ||| || ||||||||| || ||| Sbjct 983826 GTACAAAGCGCAGGGACGTAGTCAGCGCAATC-TGGTGAATCCCGCTTACTA-GACGTTC 983769 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGAT 104 |||| | ||| | ||||||| || ||||| ||||||||| Sbjct 983768 CTCGGTCGAGATTGATAATTGCA---ATATATCCTCATCACGAT 983728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751997275410