Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vivax_20[genbank_20GCA_5F900093545.1_202016-11-18] 374 sequences; 28,995,317 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq3 120 6e-25 seq6 100 5e-19 seq5 87.8 3e-15 seq2 87.8 3e-15 >seq3 Length=1351876 Score = 120 bits (132), Expect = 6e-25 Identities = 188/265 (71%), Gaps = 27/265 (10%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC--------CTTTGCTCG----AATAC 122 ||||||||| |||||||||||||||||||| | | |||| || ||||| Sbjct 899580 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAAACAGATATAGCATTGCGCGTTTGAATAC 899639 Query 123 ATTAGCATGGAATAATAGAATAGGAC--GTGCG------GTTCTATTTTGTTGGTTTCTA 174 |||||||||||| | ||| | || || | ||||| |||| || ||| Sbjct 899640 TACAGCATGGAATAACAAAATTGAACAAGTCAGAATTTTGTTCTTTTTTCTTATTTT--- 899696 Query 175 GGACCGCCGTAATGATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGT 233 || | || | |||||||||| ||| | ||||| | ||||||| |||||||||| Sbjct 899697 GG--CTTAGTTACGATTAATAGGAGTAGCTTGGGGGCATTTGTATTCAGATGTCAGAGGT 899754 Query 234 GAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCA 293 ||||||||| ||||| || |||| ||| ||||||||||| || || | || || || Sbjct 899755 GAAATTCTTAGATTTTCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATACTTCCA 899814 Query 294 TTAATCAGTGAACGAAAGTTAGGGG 318 ||||||| |||||||||||| ||| Sbjct 899815 TTAATCA-AGAACGAAAGTTAAGGG 899838 >seq6 Length=1091801 Score = 100 bits (110), Expect = 5e-19 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 188 GATTAATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 ||||||| || ||| ||||| | ||||||| ||||||||||||||||||| ||| Sbjct 982754 GATTAATTGGAGTAGCATGGGGGCATTTGTATTCAGATGTCAGAGGTGAAATTCTTAGAT 982813 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 || || |||| ||| ||||||||||| || || | || ||| ||||||||| |||| Sbjct 982814 TTTCTGGAGACAAACAACTGCGAAAGCATTTGCCTAAAATATTTCCATTAATCA-AGAAC 982872 Query 307 GAAAGTTAGGGG 318 |||||||| ||| Sbjct 982873 GAAAGTTAAGGG 982884 >seq5 Length=1427117 Score = 87.8 bits (96), Expect = 3e-15 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 188 GATTAATAGGGATAGTCGGGGGTG-TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 |||||||||| |||| |||| | ||||||| |||||||||||||||||| ||| Sbjct 151439 GATTAATAGGAGTAGTTTGGGGACATTTGTATTCAGATGTCAGAGGTGAAATTCTAAGAT 151380 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 || || |||| ||| |||||||| || || | | || || ||||||||| |||| Sbjct 151379 TTTCTGGAGACAAACAACTGCGAAGGCATTTGTCTAAAATACTTCCATTAATCA-AGAAC 151321 Query 307 GAAAGTTAGGGG 318 |||||||| ||| Sbjct 151320 GAAAGTTAAGGG 151309 >seq2 Length=814089 Score = 87.8 bits (96), Expect = 3e-15 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 188 GATTAATAGGGATAGTCGGGGGTG-TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 |||||||||| |||| |||| | ||||||| |||||||||||||||||| ||| Sbjct 137815 GATTAATAGGAGTAGTTTGGGGACATTTGTATTCAGATGTCAGAGGTGAAATTCTAAGAT 137756 Query 247 TTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAAC 306 || || |||| ||| |||||||| || || | | || || ||||||||| |||| Sbjct 137755 TTTCTGGAGACAAACAACTGCGAAGGCATTTGTCTAAAATACTTCCATTAATCA-AGAAC 137697 Query 307 GAAAGTTAGGGG 318 |||||||| ||| Sbjct 137696 GAAAGTTAAGGG 137685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915196577152